atlassian-agent 0.29.0

Comprehensive AI agent for Jira and Confluence management.

Atlassian Agent

CLI or API | MCP | Agent

Version: 0.29.0

Documentation — Installation, deployment, and usage across the MCP, Python API, and CLI interfaces, along with guidance for connecting to Atlassian Cloud and Server instances, are maintained in the official documentation.

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Overview

Atlassian Agent is a production-grade Agent and Model Context Protocol (MCP) server designed to interface directly with Comprehensive AI agent for Jira and Confluence management..

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Key Features

• Consolidated Action-Routed MCP Tools: Minimizes token overhead and eliminates tool bloat in LLM contexts by grouping methods into optimized, togglable tool modules.
• Enterprise-Grade Security: Comprehensive support for Eunomia policies, OIDC token delegation, and granular execution context tracking.
• Integrated Graph Agent: Built-in Pydantic AI agent supporting the Agent Control Protocol (ACP) and standard Web interfaces (AG-UI).
• Native Telemetry & Tracing: Out-of-the-box OpenTelemetry exports and native Langfuse tracing.

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CLI or API

This agent wraps the Comprehensive AI agent for Jira and Confluence management. API. You can interact with it programmatically or via its integrated execution entrypoints.

Detailed instructions on how to use the underlying API wrappers, extended schema bindings, and developer SDK references are maintained in docs/index.md.

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MCP

This server utilizes dynamic Action-Routed tools to optimize token overhead and maximize IDE compatibility.

Available MCP Tools

Tool Module	Toggle Env Var	Enabled by Default	Description & Nested Methods
Atlassian Control	ATLASSIAN_CONTROL_TOOL	True	Manage atlassian control operations. Action-routed methods: control_cloud_ap_is_add_users_to_policy, control_cloud_ap_is_attach_detach_resources_v2, control_cloud_ap_is_bulk_fetch_auth_policy, control_cloud_ap_is_create_policy, control_cloud_ap_is_create_policy_v2, control_cloud_ap_is_create_resource, control_cloud_ap_is_delete_policy, control_cloud_ap_is_delete_resource, control_cloud_ap_is_delete_resources, control_cloud_ap_is_delete_resources_v2, control_cloud_ap_is_get_policies, control_cloud_ap_is_get_policies_v2, control_cloud_ap_is_get_policy, control_cloud_ap_is_get_policy_v2, control_cloud_ap_is_get_resources, control_cloud_ap_is_get_resources_v2, control_cloud_ap_is_get_task_status, control_cloud_ap_is_publish_draft_policies, control_cloud_ap_is_update_policy, control_cloud_ap_is_update_policy_v2, control_cloud_ap_is_update_resource, control_cloud_ap_is_validate_policy.
Atlassian Org	ATLASSIAN_ORG_TOOL	True	Manage atlassian org operations. Action-routed methods: org_cloud_add_resource_to_policy, org_cloud_assign_role, org_cloud_assign_role_to_group, org_cloud_create_policy, org_cloud_delete_policy, org_cloud_delete_policy_resource, org_cloud_delete_v1_orgs_org_id_directory_groups_group_id, org_cloud_delete_v1_orgs_org_id_directory_groups_group_id_memberships_account_id, org_cloud_delete_v1_orgs_org_id_directory_users_account_id, org_cloud_delete_v2_orgs_org_id_directories_directory_id_groups_group_id, org_cloud_delete_v2_orgs_org_id_directories_directory_id_groups_group_id_memberships_account_id, org_cloud_delete_v2_orgs_org_id_directories_directory_id_users_account_id, org_cloud_get_directories_for_org, org_cloud_get_directory_user_details, org_cloud_get_directory_users, org_cloud_get_directory_users_count, org_cloud_get_domain_by_id, org_cloud_get_domains, org_cloud_get_event_actions, org_cloud_get_event_by_id, org_cloud_get_events, org_cloud_get_group, org_cloud_get_group_role_assignments, org_cloud_get_groups, org_cloud_get_groups_count, org_cloud_get_groups_stats, org_cloud_get_org_by_id, org_cloud_get_orgs, org_cloud_get_policies, org_cloud_get_policy_by_id, org_cloud_get_user_role_assignments, org_cloud_get_user_stats, org_cloud_get_users, org_cloud_get_v1_orgs_org_id_directory_users_account_id_last_active_dates, org_cloud_poll_events, org_cloud_post_v1_orgs_org_id_directory_groups, org_cloud_post_v1_orgs_org_id_directory_groups_group_id_memberships, org_cloud_post_v1_orgs_org_id_directory_users_account_id_restore_access, org_cloud_post_v1_orgs_org_id_directory_users_account_id_suspend_access, org_cloud_post_v1_orgs_org_id_users_invite, org_cloud_post_v1_orgs_org_id_users_user_id_role_assignments_assign, org_cloud_post_v1_orgs_org_id_users_user_id_role_assignments_revoke, org_cloud_post_v2_orgs_org_id_directories_directory_id_groups, org_cloud_post_v2_orgs_org_id_directories_directory_id_groups_group_id_memberships, org_cloud_post_v2_orgs_org_id_directories_directory_id_groups_group_id_role_assignments_assign, org_cloud_post_v2_orgs_org_id_directories_directory_id_groups_group_id_role_assignments_revoke, org_cloud_post_v2_orgs_org_id_directories_directory_id_users_account_id_restore, org_cloud_post_v2_orgs_org_id_directories_directory_id_users_account_id_suspend, org_cloud_post_v2_orgs_org_id_users_invite, org_cloud_query_workspaces_v2, org_cloud_revoke_role, org_cloud_revoke_role_to_group, org_cloud_search_groups, org_cloud_search_users, org_cloud_update_policy, org_cloud_update_policy_resource, org_cloud_validate_policy.
Atlassian Dlp	ATLASSIAN_DLP_TOOL	True	Manage atlassian dlp operations. Action-routed methods: dlp_cloud_archive_level, dlp_cloud_create_level, dlp_cloud_edit_level, dlp_cloud_get_level, dlp_cloud_get_level_list, dlp_cloud_publish_level, dlp_cloud_reorder, dlp_cloud_restore_level.
Atlassian User Mgmt	ATLASSIAN_USER_MGMT_TOOL	True	Manage atlassian user mgmt operations. Action-routed methods: user_mgmt_cloud_delete_users_account_id_manage_api_tokens_token_id, user_mgmt_cloud_get_users_account_id_manage, user_mgmt_cloud_get_users_account_id_manage_api_tokens, user_mgmt_cloud_get_users_account_id_manage_profile, user_mgmt_cloud_patch_users_account_id_manage_profile, user_mgmt_cloud_post_users_account_id_manage_lifecycle_cancel_delete, user_mgmt_cloud_put_users_account_id_manage_email.
Atlassian Admin	ATLASSIAN_ADMIN_TOOL	True	Manage atlassian admin operations. Action-routed methods: admin_cloud_add_resource_to_policy, admin_cloud_assign_role, admin_cloud_assign_role_to_group, admin_cloud_create_policy, admin_cloud_delete_policy, admin_cloud_delete_policy_resource, admin_cloud_delete_v1_orgs_org_id_directory_groups_group_id, admin_cloud_delete_v1_orgs_org_id_directory_groups_group_id_memberships_account_id, admin_cloud_delete_v1_orgs_org_id_directory_users_account_id, admin_cloud_delete_v2_orgs_org_id_directories_directory_id_groups_group_id, admin_cloud_delete_v2_orgs_org_id_directories_directory_id_groups_group_id_memberships_account_id, admin_cloud_delete_v2_orgs_org_id_directories_directory_id_users_account_id, admin_cloud_get_directories_for_org, admin_cloud_get_directory_user_details, admin_cloud_get_directory_users, admin_cloud_get_directory_users_count, admin_cloud_get_domain_by_id, admin_cloud_get_domains, admin_cloud_get_event_actions, admin_cloud_get_event_by_id, admin_cloud_get_events, admin_cloud_get_group, admin_cloud_get_group_role_assignments, admin_cloud_get_groups, admin_cloud_get_groups_count, admin_cloud_get_groups_stats, admin_cloud_get_org_by_id, admin_cloud_get_orgs, admin_cloud_get_policies, admin_cloud_get_policy_by_id, admin_cloud_get_user_role_assignments, admin_cloud_get_user_stats, admin_cloud_get_users, admin_cloud_get_v1_orgs_org_id_directory_users_account_id_last_active_dates, admin_cloud_poll_events, admin_cloud_post_v1_orgs_org_id_directory_groups, admin_cloud_post_v1_orgs_org_id_directory_groups_group_id_memberships, admin_cloud_post_v1_orgs_org_id_directory_users_account_id_restore_access, admin_cloud_post_v1_orgs_org_id_directory_users_account_id_suspend_access, admin_cloud_post_v1_orgs_org_id_users_invite, admin_cloud_post_v1_orgs_org_id_users_user_id_role_assignments_assign, admin_cloud_post_v1_orgs_org_id_users_user_id_role_assignments_revoke, admin_cloud_post_v2_orgs_org_id_directories_directory_id_groups, admin_cloud_post_v2_orgs_org_id_directories_directory_id_groups_group_id_memberships, admin_cloud_post_v2_orgs_org_id_directories_directory_id_groups_group_id_role_assignments_assign, admin_cloud_post_v2_orgs_org_id_directories_directory_id_groups_group_id_role_assignments_revoke, admin_cloud_post_v2_orgs_org_id_directories_directory_id_users_account_id_restore, admin_cloud_post_v2_orgs_org_id_directories_directory_id_users_account_id_suspend, admin_cloud_post_v2_orgs_org_id_users_invite, admin_cloud_query_workspaces_v2, admin_cloud_revoke_role, admin_cloud_revoke_role_to_group, admin_cloud_search_groups, admin_cloud_search_users, admin_cloud_update_policy, admin_cloud_update_policy_resource, admin_cloud_validate_policy.
Atlassian Api Access	ATLASSIAN_API_ACCESS_TOOL	True	Manage atlassian api access operations. Action-routed methods: api_access_cloud_bulk_revoke_api_tokens, api_access_cloud_count_service_account_api_tokens, api_access_cloud_get_all_api_keys_by_org_id, api_access_cloud_get_all_api_tokens_by_org_id, api_access_cloud_get_api_key_count_by_org_id, api_access_cloud_get_api_token_count_by_org_id, api_access_cloud_get_service_account_api_token, api_access_cloud_revoke_api_key, api_access_cloud_revoke_api_tokens.
Atlassian User Provisioning	ATLASSIAN_USER_PROVISIONING_TOOL	True	Manage atlassian user provisioning operations. Action-routed methods: user_provisioning_cloud_create_a_group_in_active_directory, user_provisioning_cloud_create_a_user_in_an_active_directory, user_provisioning_cloud_delete_a_group, user_provisioning_cloud_delete_a_user_from_an_active_directory, user_provisioning_cloud_delete_admin_user_provisioning_v1_org_org_id_user_aaid_only_delete_user_in_db, user_provisioning_cloud_get, user_provisioning_cloud_get_a_user_from_active_directory, user_provisioning_cloud_get_all_groups_from_an_active_directory, user_provisioning_cloud_get_config, user_provisioning_cloud_get_extension_user_schemas, user_provisioning_cloud_get_group_resource_type, user_provisioning_cloud_get_group_schemas, user_provisioning_cloud_get_resource_types, user_provisioning_cloud_get_schemas, user_provisioning_cloud_get_scim_links, user_provisioning_cloud_get_scim_links_by_email, user_provisioning_cloud_get_user_resource_type, user_provisioning_cloud_get_user_schemas, user_provisioning_cloud_get_users_from_an_active_directory, user_provisioning_cloud_patch, user_provisioning_cloud_patch_user_information_in_an_active_directory, user_provisioning_cloud_put, user_provisioning_cloud_unlink_scim_user, user_provisioning_cloud_update_user_information_in_an_active_directory.
Atlassian	ATLASSIAN_TOOL	True	Manage atlassian operations. Action-routed methods: user_mgmt_cloud_post_users_account_id_manage_lifecycle_delete, user_mgmt_cloud_post_users_account_id_manage_lifecycle_disable, user_mgmt_cloud_post_users_account_id_manage_lifecycle_enable.
Jira Project	JIRA_PROJECT_TOOL	True	Manage Jira project operations.
Jira User	JIRA_USER_TOOL	True	Manage Jira user operations.
Jira Issue	JIRA_ISSUE_TOOL	True	Manage Jira issue operations.
Jira Comment	JIRA_COMMENT_TOOL	True	Manage Jira comment operations.
Jira Field	JIRA_FIELD_TOOL	True	Manage Jira field operations.
Jira Screen	JIRA_SCREEN_TOOL	True	Manage Jira screen operations.
Jira Workflow	JIRA_WORKFLOW_TOOL	True	Manage Jira workflow operations.
Jira Other	JIRA_OTHER_TOOL	True	Manage Jira other operations.
Confluence Page	CONFLUENCE_PAGE_TOOL	True	Manage Confluence page operations.
Confluence Space	CONFLUENCE_SPACE_TOOL	True	Manage Confluence space operations.
Confluence User	CONFLUENCE_USER_TOOL	True	Manage Confluence user operations.
Confluence Other	CONFLUENCE_OTHER_TOOL	True	Manage Confluence other operations.

Detailed tool schemas, parameter shapes, and validation constraints are preserved in docs/mcp.md.

Dynamic Tool Selection & Visibility

This MCP server supports dynamic toolset selection and visibility filtering at runtime. This allows you to restrict the set of exposed tools in order to prevent blowing up the LLM's context window.

You can configure tool filtering via multiple input channels:

• CLI Arguments: Pass --tools or --toolsets (or their disabled counterparts --disabled-tools and --disabled-toolsets) during startup.
• Environment Variables: Define standard environment variables:
  • MCP_ENABLED_TOOLS / MCP_DISABLED_TOOLS
  • MCP_ENABLED_TAGS / MCP_DISABLED_TAGS
• HTTP SSE Request Headers: Pass custom headers during transport initialization:
  • x-mcp-enabled-tools / x-mcp-disabled-tools
  • x-mcp-enabled-tags / x-mcp-disabled-tags
• HTTP SSE Request Query Parameters: Append query parameters directly to your transport connection URL:
  • ?tools=tool1,tool2
  • ?tags=tag1

When query strings or parameters are supplied, an LLM-free Knowledge Graph resolution layer (using DynamicToolOrchestrator) matches query intents against known tool tags, names, or descriptions, with safe fallback and automated 24-hour background cache refreshing.

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MCP Configuration Examples

stdio Transport (Recommended for local IDEs e.g., Cursor, Claude Desktop)

Configure your IDE's mcp.json to launch the MCP server via uvx:

{
  "mcpServers": {
    "atlassian-agent": {
      "command": "uvx",
      "args": [
        "--from",
        "atlassian-agent",
        "atlassian-mcp"
      ],
      "env": {
        "ATLASSIAN_AGENT_URL": "your_atlassian_agent_url_here",
        "ATLASSIAN_AGENT_USER": "your_atlassian_agent_user_here",
        "ATLASSIAN_AGENT_TOKEN": "your_atlassian_agent_token_here",
        "ATLASSIAN_AGENT_VERIFY": "your_atlassian_agent_verify_here",
        "DEBUG": "your_debug_here",
        "PYTHONUNBUFFERED": "your_pythonunbuffered_here"
      }
    }
  }
}

Streamable-HTTP Transport (Recommended for production deployments)

Configure your client's mcp.json to launch the Streamable-HTTP server via uvx with explicit host and port definition:

{
  "mcpServers": {
    "atlassian-agent": {
      "command": "uvx",
      "args": [
        "--from",
        "atlassian-agent",
        "atlassian-mcp"
      ],
      "env": {
        "TRANSPORT": "streamable-http",
        "HOST": "0.0.0.0",
        "PORT": "8000",
        "ATLASSIAN_AGENT_URL": "your_atlassian_agent_url_here",
        "ATLASSIAN_AGENT_USER": "your_atlassian_agent_user_here",
        "ATLASSIAN_AGENT_TOKEN": "your_atlassian_agent_token_here",
        "ATLASSIAN_AGENT_VERIFY": "your_atlassian_agent_verify_here",
        "DEBUG": "your_debug_here",
        "PYTHONUNBUFFERED": "your_pythonunbuffered_here"
      }
    }
  }
}

Alternatively, connect to a pre-deployed remote or local Streamable-HTTP instance:

{
  "mcpServers": {
    "atlassian-agent": {
      "url": "http://localhost:8000/atlassian-agent/mcp"
    }
  }
}

Deploying the Streamable-HTTP server via Docker:

docker run -d \
  --name atlassian-agent-mcp \
  -p 8000:8000 \
  -e TRANSPORT=streamable-http \
  -e PORT=8000 \
  -e ATLASSIAN_AGENT_URL="your_value" \
  -e ATLASSIAN_AGENT_USER="your_value" \
  -e ATLASSIAN_AGENT_TOKEN="your_value" \
  -e ATLASSIAN_AGENT_VERIFY="your_value" \
  -e DEBUG="your_value" \
  -e PYTHONUNBUFFERED="your_value" \
  knucklessg1/atlassian-agent:latest

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Additional Deployment Options

atlassian-agent can also run as a local container (Docker / Podman / uv) or be consumed from a remote deployment. The Deployment guide has full, copy-paste mcp_config.json for all four transports — stdio, streamable-http, local container / uv, and remote URL:

• Local container / uv — launch the server from mcp_config.json via uvx, docker run, or podman run, or point at a local streamable-http container by url.
• Remote URL — connect to a server deployed behind Caddy at http://atlassian-mcp.arpa/mcp using the "url" key.

Agent

This repository features a fully integrated Pydantic AI Graph Agent. It communicates over the Agent Control Protocol (ACP) and interacts seamlessly with the Agent Web UI (AG-UI) and Terminal interface.

Running the Agent CLI

To start the interactive command-line agent:

# Set credentials
export ATLASSIAN_AGENT_URL="your_value"
export ATLASSIAN_AGENT_USER="your_value"
export ATLASSIAN_AGENT_TOKEN="your_value"
export ATLASSIAN_AGENT_VERIFY="your_value"
export DEBUG="your_value"
export PYTHONUNBUFFERED="your_value"

# Run the agent server
atlassian-agent --provider openai --model-id gpt-4o

Docker Compose Orchestration

The following docker/agent.compose.yml configures the Agent, Web UI, and Terminal Interface together:

version: '3.8'

services:
  atlassian-agent-mcp:
    image: knucklessg1/atlassian-agent:latest
    container_name: atlassian-agent-mcp
    hostname: atlassian-agent-mcp
    restart: always
    env_file:
      - ../.env
    environment:
      - PYTHONUNBUFFERED=1
      - HOST=0.0.0.0
      - PORT=8000
      - TRANSPORT=streamable-http
    ports:
      - "8000:8000"
    healthcheck:
      test: ["CMD", "python3", "-c", "import urllib.request; urllib.request.urlopen('http://localhost:8000/health')"]
      interval: 30s
      timeout: 10s
      retries: 3
      start_period: 10s
    logging:
      driver: json-file
      options:
        max-size: "10m"
        max-file: "3"

  atlassian-agent-agent:
    image: knucklessg1/atlassian-agent:latest
    container_name: atlassian-agent-agent
    hostname: atlassian-agent-agent
    restart: always
    depends_on:
      - atlassian-agent-mcp
    env_file:
      - ../.env
    command: [ "atlassian-agent" ]
    environment:
      - PYTHONUNBUFFERED=1
      - HOST=0.0.0.0
      - PORT=9004
      - MCP_URL=http://atlassian-agent-mcp:8000/mcp
      - PROVIDER=${PROVIDER:-openai}
      - MODEL_ID=${MODEL_ID:-gpt-4o}
      - ENABLE_WEB_UI=True
      - ENABLE_OTEL=True
    ports:
      - "9004:9004"
    healthcheck:
      test: ["CMD", "python3", "-c", "import urllib.request; urllib.request.urlopen('http://localhost:9004/health')"]
      interval: 30s
      timeout: 10s
      retries: 3
      start_period: 10s
    logging:
      driver: json-file
      options:
        max-size: "10m"
        max-file: "3"

Detailed graph node architecture explanations, custom skill configurations, and agentic trace guides are available in docs/agent.md.

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Security & Governance

Built directly upon the enterprise-ready agent-utilities core, standard security parameters are fully supported:

Access Control & Policy Enforcement

• Eunomia Policies: Fine-grained, policy-driven tool authorization. Supports none, local embedded (mcp_policies.json), or centralized remote modes.
• OIDC Token Delegation: Compliant with RFC 8693 token exchange for flowing authenticating user credentials from Web UI / ACP → Agent → MCP.
• Scoped Credentials: Execution context runs restricted to the specific caller identity.

Runtime Security Grid

Feature	Functionality	Enablement
Tool Guard	Sensitivity inspection with human-in-the-loop validation	Enabled by default
Prompt Injection Defense	Input scanning, repetition monitoring, and recursive loop blocks	Enabled by default
Context Safety Guard	Stuck-loop detectors and contextual overflow preemptive alerts	Enabled by default

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Installation

Install the Python package locally:

# Using uv (highly recommended)
uv pip install atlassian-agent[all]

# Using standard pip
python -m pip install atlassian-agent[all]

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Documentation

The complete documentation is published as the official documentation site and is the recommended reference for installation, deployment, and day-to-day operation.

Page	Contents
Installation	pip, source, extras, prebuilt Docker image
Deployment	run the MCP server, the agent server, Compose, Caddy + Technitium, env config
Usage	the MCP tools, the Atlassian Python clients, the CLI
Overview	architecture, enterprise readiness, MCP configuration
Concepts	concept registry (CONCEPT:ATL-*)

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Repository Owners

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Contribute

Contributions are welcome! Please ensure code quality by executing local checks before submitting pull requests:

• Format code using ruff format .
• Lint code using ruff check .
• Validate type-safety with mypy .
• Execute test suites using pytest