3D Atomic Data Processing
Project description
Processing of 3D atomic data.
Installation
$ pip install atom3
Usage
Process a PDB file to a pickled pandas dataframe.
$ atom3 parse sample/11as.pdb1.gz sample/parsed
Derive subunits of a parsed dataframe.
$ atom3 complex sample/parsed sample/complexes.dill
Split subunits into interacting pairs.
$ atom3 pairs sample/complexes.dill sample/pairs
For help on commands.
$ atom3 -h
$ atom3 parse -h
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
atom3-0.1.4.tar.gz
(20.6 kB
view details)
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
atom3-0.1.4-py2-none-any.whl
(26.6 kB
view details)
File details
Details for the file atom3-0.1.4.tar.gz.
File metadata
- Download URL: atom3-0.1.4.tar.gz
- Upload date:
- Size: 20.6 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.21.0 setuptools/40.6.2 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/2.7.15
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
6effc7c20ae46e42522c2d3f386947d9a722a071f352100dbd9049eaada3b888
|
|
| MD5 |
e1b754e05f835c8ec06c02e3945ab058
|
|
| BLAKE2b-256 |
8f000ecc56e336d8695a4072853acb63691481519bc042b2f353dd9b7ec57a67
|
File details
Details for the file atom3-0.1.4-py2-none-any.whl.
File metadata
- Download URL: atom3-0.1.4-py2-none-any.whl
- Upload date:
- Size: 26.6 kB
- Tags: Python 2
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.21.0 setuptools/40.6.2 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/2.7.15
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
ed84c430991fe5168c777d3cab1f505646710d34aeaa8516df62822252d09285
|
|
| MD5 |
64037dced0f1999b480a4eb0f2f028a0
|
|
| BLAKE2b-256 |
d428c8c0134dbe9cfcba2e623fedfa0292692e2dbe0c11d5ad88c8c9086d2018
|