attribute-standardizer 0.1.1

BEDMess attribute standardizer for metadata attribute standardization

bedmess

bedmess is a tool used to standardize genomics/epigenomics metadata based on a schema chosen by the user ( eg. ENCODE, FAIRTRACKS).

Presently, bedmess only provides standardization according to the ENCODE schema.

You can install the attribute_standardizer by:

pip install attribute-standardizer

Usage

Using Python, this is how you can run attribute_standardizer :

from attribute_standardizer.attribute_standardizer import attr_standardizer

attr_standardizer(pep=/path/to/pep, schema="ENCODE")

You can use the format provided in the trial.py script in this repository as a reference.