GWAS summary QC plotting tool (QQ & Manhattan plots)
Project description
AudreyLab-SummaryPostQC
AudreyLab-SummaryPostQC is a command-line tool to generate QQ plots and Manhattan plots from GWAS summary statistics.
It was developed by Etienne Kabongo from the Audrey Grant Lab, McGill University.
🔧 Features
- Parses post-QC GWAS summary files (e.g. from REGENIE)
- Filters valid P-values
- Computes genomic inflation factor (λGC)
- Creates clean and high-quality QQ plots
- Creates Manhattan plots (per chromosome)
📦 Installation
pip install audreylab-summarypostqc
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