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Universal Adaptive Imputer – A hybrid VAE + latent nearest neighbor imputation model with uncertainty estimation.

Project description

AURAI – Adaptive Uncertainty-Regularized Autoencoder Imputer

Author: Abdul Mofique Siddiqui
License: MIT
Install via pip:

pip install aurai-imputer

Import it in your Python code:

from aurai import AURAIImputer

Overview

AURAI (Adaptive Uncertainty-Regularized Autoencoder Imputer) is an advanced hybrid imputation framework that combines:

  • A mask-aware Variational Autoencoder (VAE)
  • Latent-space nearest-neighbor refinement
  • A feature-wise adaptive gating mechanism
  • Monte-Carlo–based uncertainty estimation

AURAI supports both numerical and categorical datasets and performs reliably under:

  • MCAR (Missing Completely At Random)
  • MAR (Missing At Random)
  • MNAR (Missing Not At Random)

The imputer also produces confidence intervals for each filled value, making it suitable for decision-critical applications.

Installation

Install the package via pip:

pip install aurai-imputer

How It Works

  • Global VAE Module Learns latent structure and reconstructs both numeric and categorical distributions.
  • Latent-Space KNN Module Uses nearest neighbors in latent space to refine local predictions.
  • Adaptive Gating Produces a learnable per-feature weight that blends global (VAE) and local (KNN) imputations.
  • Uncertainty Estimation Monte-Carlo sampling over latent variables yields:
    • Posterior means
    • 95% confidence intervals
  • Mixed Data Support Uses StandardScaler + OrdinalEncoder to handle mixed data seamlessly.

Getting Started

1. Import the package

from aurai import AURAIImputer

2. Initialize the imputer

imputer = AURAIImputer()

3. Fit the model

imputer.fit(df)
  • df: pandas DataFrame containing numerical and/or categorical columns

4. Impute missing values

imputed = imputer.transform(df)

Returns a NumPy array with missing values filled.

5. Impute with uncertainty intervals

mean, lower, upper = imputer.transform(df, return_intervals=True)

API Reference

AURAIImputer()

Initializes the imputer. Supports optional parameters such as latent dimension, Monte Carlo samples, neighbors count, etc.

.fit(df)

Fits the model to training data.

Parameters:

  • df: pandas DataFrame with mixed features

.transform(df, return_intervals=False)

Returns imputed values.

Input:

  • df: DataFrame or numpy array with missing values

Output:

  • A NumPy array with imputed values
  • If return_intervals=True: returns (mean, lower, upper)

.save(path)

Saves:

  • model weights
  • preprocessor
  • metadata

.load(path)

Loads a previously saved AURAI model.

Example Usage

Example 1: Basic Imputation

from aurai import AURAIImputer
import pandas as pd

df = pd.read_csv("data.csv")
imputer = AURAIImputer()
imputer.fit(df)
imputed = imputer.transform(df)

Example 2: Imputation with Uncertainty

mean, lower, upper = imputer.transform(df, return_intervals=True)

Internals

  • Variational Autoencoder (VAE) Learns global structure and reconstructs numeric means, variances, and categorical logits.
  • Latent-Space Nearest Neighbor Search Provides local refinement to improve imputation accuracy.
  • Gating Network Learns per-feature blending weights for global + local fusion.
  • Cluster Regularization Encourages structured and stable latent geometry.
  • Monte Carlo Sampling Produces mean predictions and confidence intervals.

Notes

  • Works with both numeric and categorical data.
  • Performs well under MCAR, MAR, and MNAR.
  • Provides uncertainty intervals for downstream tasks.
  • GPU recommended for training large datasets.

Author

Abdul Mofique Siddiqui

License

This project is licensed under the MIT License.

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