Bioinformatics IO and workflow utilities with Rust-accelerated backends.
Project description
axiomkit (Python)
Install
- Core:
pip install axiomkit
- All features:
pip install "axiomkit[all]"
Optional Extras
cli: Rich CLI formatter and headings (rich,rich-argparse)parquet: Parquet writer (polars)xlsx: XLSX writer (polars,xlsxwriter)fasta: FASTA reader (biopython,pyteomics,polars)stats: ORA/statistics (numpy,scipy,polars)
When an optional feature is used without required dependencies,
axiomkit raises a ModuleNotFoundError with an install hint, e.g.:
pip install "axiomkit[xlsx]"
Development
- Full dev environment:
pdm sync -G dev --no-self
Release
- Release checklist:
RELEASE.md - One-shot publish script:
scripts/release_pypi.sh
Release history Release notifications | RSS feed
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Provenance
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Publisher:
publish.yml on FuqingZh/axiomkit
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