Single-neuron surrogate benchmark and dataset generation workbench.
Project description
AxoBench
AxoBench is the extracted benchmark and dataset-generation workbench for single-neuron surrogate evaluation. It owns dataset generation, data/schema utilities, diagnostic suites, and benchmark reporting.
The package keeps simulator-backed generation code under
src/axobench/generation/: Arbor, NEURON/Hay, CoreNEURON/Hay, SWC-template
preparation, morphology-candidate ranking, throughput probes, and the v1
parallel dataset generator. scripts/ is reserved for thin operational entry
points such as launch scripts and data-download helpers.
Model implementations, training loops, checkpoint formats, and model-specific
experiments stay in bnn_sim. AxoBench evaluates caller-supplied prediction
functions or stored prediction/diagnostic artifacts; it does not ship BranchELM,
Mamba, RNN, or training code.
The active exploration arc lives in docs/benchmark/, which is ignored by Git
while the benchmark audit is still exploratory.
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