Package for analysis of biophysical assays, such as DSF
Project description
Biophysical Assay Data Analysis
A Python package for analyzing and visualizing Differential Scanning Fluorimetry (DSF) data.
Features
- data import from commonly biophysical instrument formats. Currently supported instruments are QuantStudio7 and Lightcycler 480.
- quick visualization for raw data and the signals first derivative
- convenient calculation of relevant features such as the melting temperature Tm (here: max first derivative)
- identification of atypical shapes of signals (e.g. empty wells, failed experiment)
Installation
From PyPI (Recommended)
The easiest way to install is via pip:
pip install bada
From Source
To install the latest development version:
-
Clone the repository:
git clone https://github.com/username/biophysical-assay-data-analysis.git cd biophysical-assay-data-analysis
-
Create a virtual environment (optional but recommended) using e.g. uv
-
Install the package in development mode:
pip install -e .
Usage
To get started with this package, please refer to the example Jupyter notebooks in the notebooks
folder. These notebooks provide step-by-step guides for common workflows and demonstrate the key
functionality of the package.
License
This project is licensed under the MIT License - see the LICENSE file for details.
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