Biophysical Assay Data Analysis
A Python package for analyzing and visualizing Differential Scanning Fluorimetry (DSF) data.
Features
- data import from commonly biophysical instrument formats. Currently supported instruments are QuantStudio7 and Lightcycler 480.
- quick visualization for raw data and the signals first derivative
- convenient calculation of relevant features such as the melting temperature Tm (here: max first derivative)
- identification of atypical shapes of signals (e.g. empty wells, failed experiment)
Installation
From PyPI (Recommended)
The easiest way to install is via pip:
pip install bada
From Source
To install the latest development version:
-
Clone the repository:
git clone https://github.com/username/biophysical-assay-data-analysis.git cd biophysical-assay-data-analysis
-
Create a virtual environment (optional but recommended) using e.g. uv
-
Install the package in development mode:
pip install -e .
Usage
To get started with this package, please refer to the example Jupyter notebooks in the notebooks
folder. These notebooks provide step-by-step guides for common workflows and demonstrate the key
functionality of the package.
License
This project is licensed under the MIT License - see the LICENSE file for details.
1 maintainer
Metadata
1 maintainer
Release files for bada 0.1.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| bada-0.1.3.tar.gz | 1.1 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| bada-0.1.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 1.2 MB
Release files / bada-0.1.3.tar.gz
| Download URL | bada-0.1.3.tar.gz |
|---|---|
| Size | 1.1 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
uv/0.10.4 {"installer":{"name":"uv","version":"0.10.4","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"Ubuntu","version":"24.04","id":"noble","libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":true}
|
Release files / bada-0.1.3-py3-none-any.whl
| Download URL | bada-0.1.3-py3-none-any.whl |
|---|---|
| Size | 33.9 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
uv/0.10.4 {"installer":{"name":"uv","version":"0.10.4","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"Ubuntu","version":"24.04","id":"noble","libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":true}
|
