bamread
Read bam files quickly into dataframes in Python
Development
Development
See How to Publish an Open-Source Python Package to PyPI
Install
pip install -e . # -e flag means editing affects the installed package
Create sdist and wheel (requires build)
python -m build
Check whether the package archives look fine:
twine check dist/*
Upload to PyPI test server
twine upload -r testpypi dist/*
Chek that the package can be installed from the test server
python -m pip install -i https://test.pypi.org/simple bamread
python -c "import bamread; print(bamread.read_bam('Some.bam'))"
Upload to pypi
twine upload -r testpypi dist/*
Run github actions locally
See act
act -l # list available jobs
act -j <job> # run a job
act pull_request # run jobs triggered upon pull_request
1 maintainer
Metadata
1 maintainer
Release files for bamread 0.0.20
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| bamread-0.0.20.tar.gz | 230.8 kB | Details |
Built distributions (wheels)
Total release size: 8.3 MB
Release files / bamread-0.0.20.tar.gz
| Download URL | bamread-0.0.20.tar.gz |
|---|---|
| Size | 230.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.8
|
Release files / bamread-0.0.20-cp312-cp312-win_amd64.whl
| Download URL | bamread-0.0.20-cp312-cp312-win_amd64.whl |
|---|---|
| Size | 302.0 kB |
| Tags | CPython 3.12 Windows x86-64 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.8
|
Release files / bamread-0.0.20-cp312-cp312-win32.whl
| Download URL | bamread-0.0.20-cp312-cp312-win32.whl |
|---|---|
| Size | 290.7 kB |
| Tags | CPython 3.12 Windows x86-32 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.8
|
Release files / bamread-0.0.20-cp312-cp312-musllinux_1_2_x86_64.whl
| Download URL | bamread-0.0.20-cp312-cp312-musllinux_1_2_x86_64.whl |
|---|---|
| Size | 796.4 kB |
| Tags | CPython 3.12 Linux musl 1.2+ x86-64 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.8
|
Release files / bamread-0.0.20-cp312-cp312-musllinux_1_2_i686.whl
| Download URL | bamread-0.0.20-cp312-cp312-musllinux_1_2_i686.whl |
|---|---|
| Size | 774.2 kB |
| Tags | CPython 3.12 Linux musl 1.2+ x86-32 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.8
|
Release files / bamread-0.0.20-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | bamread-0.0.20-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 778.1 kB |
| Tags | CPython 3.12 Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.8
|
Release files / bamread-0.0.20-cp312-cp312-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
| Download URL | bamread-0.0.20-cp312-cp312-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl |
|---|---|
| Size | 743.1 kB |
| Tags | CPython 3.12 Linux glibc 2.17+ x86-32 Linux glibc 2.5+ x86-32 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.8
|
Release files / bamread-0.0.20-cp312-cp312-macosx_11_0_arm64.whl
| Download URL | bamread-0.0.20-cp312-cp312-macosx_11_0_arm64.whl |
|---|---|
| Size | 305.8 kB |
| Tags | CPython 3.12 macOS 11.0+ ARM64 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.8
|
Release files / bamread-0.0.20-cp311-cp311-win_amd64.whl
| Download URL | bamread-0.0.20-cp311-cp311-win_amd64.whl |
|---|---|
| Size | 302.5 kB |
| Tags | CPython 3.11 Windows x86-64 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.8
|
Release files / bamread-0.0.20-cp311-cp311-win32.whl
| Download URL | bamread-0.0.20-cp311-cp311-win32.whl |
|---|---|
| Size | 291.3 kB |
| Tags | CPython 3.11 Windows x86-32 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.8
|
Release files / bamread-0.0.20-cp311-cp311-musllinux_1_2_x86_64.whl
| Download URL | bamread-0.0.20-cp311-cp311-musllinux_1_2_x86_64.whl |
|---|---|
| Size | 808.1 kB |
| Tags | CPython 3.11 Linux musl 1.2+ x86-64 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.8
|
Release files / bamread-0.0.20-cp311-cp311-musllinux_1_2_i686.whl
| Download URL | bamread-0.0.20-cp311-cp311-musllinux_1_2_i686.whl |
|---|---|
| Size | 783.4 kB |
| Tags | CPython 3.11 Linux musl 1.2+ x86-32 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.8
|
Release files / bamread-0.0.20-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | bamread-0.0.20-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 787.1 kB |
| Tags | CPython 3.11 Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.8
|
Release files / bamread-0.0.20-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
| Download URL | bamread-0.0.20-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl |
|---|---|
| Size | 762.9 kB |
| Tags | CPython 3.11 Linux glibc 2.17+ x86-32 Linux glibc 2.5+ x86-32 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.8
|
Release files / bamread-0.0.20-cp311-cp311-macosx_11_0_arm64.whl
| Download URL | bamread-0.0.20-cp311-cp311-macosx_11_0_arm64.whl |
|---|---|
| Size | 306.4 kB |
| Tags | CPython 3.11 macOS 11.0+ ARM64 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.8
|
