Brain imAgiNg Analysis iN Arcana (Banana): a collection of brain imaging analysis workflows implemented in the Arcana framework, which can be used to analyse analysis datasets stored in XNAT, BIDS or plain-directory repositories.
Installation
Banana and its dependencies can be installed from PyPI with:
$ pip3 install banana
Pipelines
Depending on which pipelines you need to run, you may need to install some or all of the following tools. Note that MRtrix3 and Dcm2niix are used for implicit format conversions so are typically required.
MRtrix3 (https://github.com/MRtrix3/mrtrix3)
Dcm2niix (https://github.com/rordenlab/dcm2niix)
Freesurfer (https://surfer.nmr.mgh.harvard.edu)
AFNI (https://afni.nimh.nih.gov)
1 maintainer
Release files for banana 0.5.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| banana-0.5.1.tar.gz | 134.5 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| banana-0.5.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 384.5 kB
Release files / banana-0.5.1.tar.gz
| Download URL | banana-0.5.1.tar.gz |
|---|---|
| Size | 134.5 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/41.0.1 requests-toolbelt/0.8.0 tqdm/4.23.3 CPython/2.7.16
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Release files / banana-0.5.1-py3-none-any.whl
| Download URL | banana-0.5.1-py3-none-any.whl |
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| Size | 250.0 kB |
| Tags | Python 3 |
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twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/41.0.1 requests-toolbelt/0.8.0 tqdm/4.23.3 CPython/2.7.16
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