Python client for Basepair

Python bindings for Basepair's API and command line interface (CLI).

Using MFA

Note: It is advisable to use MFA for increased security and best practices

After you have been added to the list of collaborators, you can verify if MFA has been activated for you by visiting collaboration page

How to build and push to pypi:

Automated publishing of distribution

In the testing stage of the changes, it is advisable to use Test PyPI. We already have github actions to publish on both Test PyPI and PyPI.

Manual way from local

python setup.py sdist bdist_wheel # This will create two files in a newly created dist directory, a source archive and a wheel:
twine upload dist/* # To upload it to Pypi
Uploading distributions to https://upload.pypi.org/legacy/
Enter your username:
Enter your password:

Note: username must be __token__ (not your pypi username) password is the token. You may generate the token -> token creation page.

That is it!

Below is a successful execution sample:

Uploading distributions to https://upload.pypi.org/legacy/
Enter your username: __token__
Enter your password:
Uploading basepair-2.0.7-py3-none-any.whl
100% ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 51.0/51.0 kB • 00:00 • 36.3 MB/s
Uploading basepair-2.0.7.tar.gz
100% ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.4/37.4 kB • 00:00 • 47.2 MB/s

View at:
https://pypi.org/project/basepair/2.0.7/

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Latest release

4 maintainers

PyPI data
Data sourced directly from PyPI's database.
Avatar for amiaynara from gravatar.com amiaynara Avatar for ausinha from gravatar.com ausinha Avatar for blas from gravatar.com blas
+1 more Avatar for Lalee10 from gravatar.com Lalee10

Credits

Author: Basepair

License

Free for non-commercial use

Tags

bioinformatics ngs analysis dna-seq rna-seq chip-seq atac-seq

Classifiers

Report project as malware

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

basepair-3.3.1.tar.gz (71.6 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

basepair-3.3.1-py3-none-any.whl (101.6 kB view details)

Uploaded Python 3

File details

Details for the file basepair-3.3.1.tar.gz.

File metadata

  • Download URL: basepair-3.3.1.tar.gz
  • Upload date:
  • Size: 71.6 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.2.0 CPython/3.14.6

File hashes

Hashes for basepair-3.3.1.tar.gz
Algorithm Hash digest
SHA256 9d093d037a7331eaacfde0932e8efaee56fc52870e131456e95f59b70f67d2bb
MD5 e05a4842b02bb0a559d1c6a419d7c40e
BLAKE2b-256 135cbce7c233f1df65d23f385a0257a11b5e9d38d6123c7e28a112423bd6cae9

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File details

Details for the file basepair-3.3.1-py3-none-any.whl.

File metadata

  • Download URL: basepair-3.3.1-py3-none-any.whl
  • Upload date:
  • Size: 101.6 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.2.0 CPython/3.14.6

File hashes

Hashes for basepair-3.3.1-py3-none-any.whl
Algorithm Hash digest
SHA256 6e5bf69d53e136f809be7d5f64c43489fa87b660646f0617467231afb76179dc
MD5 012c48752394b77500145337e7b09a93
BLAKE2b-256 afecb0f4bc3ed962f890254acd7cc15c549c5a5fe6ea2001e76c38e621bd4a08

See more details on using hashes here.

Release history Release notifications | RSS feed

This release

3.3.1

3.3.0

3.2.0

3.1.0

3.0.0

2.4.5

2.4.4

2.4.3

2.4.1

2.4.0

2.3.1

2.3.0

2.2.10a0 pre-release

2.2.9

2.2.8

2.2.7

2.2.6

2.2.5

2.2.4

2.2.3

2.2.2

2.2.1

2.2.0

2.1.14

2.1.13

2.1.12

2.1.12rc0 pre-release

2.1.12b1 pre-release

2.1.12b0 pre-release

2.1.12a4 pre-release

2.1.12a3 pre-release

2.1.12a2 pre-release

2.1.12a1 pre-release

2.1.12a0 pre-release

2.1.11

2.1.10

2.1.10rc1 pre-release

2.1.9

2.1.8

2.1.7

2.1.7rc2 pre-release

2.1.7rc1 pre-release

2.1.6

2.1.6rc2 pre-release

2.1.6rc1 pre-release

2.1.5

2.1.5rc1 pre-release

2.1.5b0 pre-release

2.1.5a0 pre-release

2.1.4

2.1.3

2.1.3b0 pre-release

2.1.3a2 pre-release

2.1.3a1 pre-release

2.1.2

2.1.2rc0 pre-release

2.1.2b0 pre-release

2.1.2a1 pre-release

2.1.2a0 pre-release

2.1.1

2.1.0

2.0.14

2.0.14a0 pre-release

2.0.13

2.0.13a2 pre-release

2.0.13a1 pre-release

2.0.12a3 pre-release

2.0.11

2.0.9

2.0.8

2.0.7

2.0.6

2.0.5

2.0.4

2.0.3

2.0.2

2.0.1

2.0.0

1.7.9

1.7.7

1.7.6

1.7.5

1.7.4

1.7.3

1.7.2

1.7.1

1.7.0

1.6.8

1.6.7

1.6.6

1.6.5

1.6.4

1.6.3

1.6.2

1.6.1

1.6.0

1.5.8

1.5.5

1.5.4

1.5.3

1.5.2

1.5.1

1.5

1.3.83

1.3.82

1.3.81

1.3.79

1.3.78

1.3.77

1.3.76

1.3.75

1.3.74

1.3.73

1.3.72

1.3.71

1.3.70

1.3.61

1.3.60

1.3.59

1.3.57

1.3.56

1.3.55

1.3.54

1.3.53

1.3.52

1.3.51

1.3.44

1.3.43

1.3.42

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