Methods and functions that support the overall operations of code based on Hail Batch.
Project description
batchutils
Overview
Main Features
Installation
Usage
Use the following function as is.
Replace the paths with [j1.ofile, j2.ofile, ...]
b = hb.Batch(
default_image='hailgenetics/hail:0.2.77,
backend=service_backend,
name=f'combine-tsvs'
)
combined = batch_combine2(
combine_tsvs_with_headers,
combine_compressed_tsvs_with_headers,
b,
'combine-tsvs-with-headers',
['gs://bucket/input1.tsv', ...],
final_location='gs://bucket/final-file.tsv.gz',
branching_factor=25,
suffix='.tsv.bgz')
final_location is where the output file is.
Cite
Maintainer
Tarjinder Singh @ tsingh@broadinstitute.org
Acknowledgements
Release Notes
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Source Distribution
batchutils-0.1.5.1.tar.gz
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