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Python bindings for the Basic Applied Topology Subprograms

Project description

Supported Python Versions PyPi License: MIT

Ubuntu Tests MacOS Tests Documentation Status

Python bindings for the Basic Applied Topology Subprograms (BATS) library. This includes:

  • Simplicial, Cubical, and Cell Complexes
  • Simplicial, Cubical, and Cellular Maps
  • Homology and induced maps
  • Persistent homology
  • Zigzag homology
  • A variety of topolgical constructions

Note that the C++ repository is the main library, and contains more features. This repository provides bindings for a subset of the functionality of BATS, and is under active development.

Documentation, examples, and tutorials can be found at

Once installed, you can import the bats namespace:

import bats

Installation with pip

The easiest way to install bats is using pip

pip install bats-tda # gcc

To use clang (e.g. on a Mac) try

CC=clang pip install bats-tda # clang

Because bats uses OpenMP, it has to be compiled from source with a C++17 compliant complier. This means installation can take a few minutes. You can pass --verbose to pip to see what is going on with installation.

If you don't have OpenMP, you can install with a package manager.

GCC (e.g. on Linux)

dnf install libgomp-devel # Fedora
apt-get install libgomp1-dev # Ubuntu

Clang (e.g. on Mac)

brew install libomp

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