bayerstraits_16s 1.0.4

Inferring traits by 16S

# bayerstraits_16s # This is a temp version of bayerstraits_16s ## Install pip install bayerstraits_16sin preparation: anaconda download caozhichongchong/bayerstraits_16s

## Test (any of these two commands) bayerstraits_16s –testbayerstraits_16s -t your.otu.table -s your.otu.seqs

## Availability in preparation: https://anaconda.org/caozhichongchong/bayerstraits_16s

https://pypi.org/project/bayerstraits_16s

## How to use it 1. test the bayerstraits_16sbayerstraits_16s –test

2. try your databayerstraits_16s -t your.otu.table -s your.otu.seqsbayerstraits_16s -t your.otu.table -s your.otu.seqs -top 2000

3. use your own traitsbayerstraits_16s -t your.otu.table -s your.otu.seqs –rs your.own.reference.16s –rt your.own.reference.traits

your.own.reference.16s is a fasta file containing the 16S sequences of your genomes>Genome_ID1ATGC…>Genome_ID2ATGC…

your.own.reference.traits is a metadata of whether there’s trait in your genomes (0 for no and 1 for yes)Genome_ID1 0Genome_ID1 1

## Introduction bayerstraits_16s infers traits by 16Sinput: otu table (-t) and otu sequences (-s)requirement: mafftOptional: fasttree

## Copyright Copyright:An Ni Zhang, Prof. Eric Alm, MITCitation:Contact [e-mail]