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Utility modules for deploying workflows in the BBCF

Project description

bbcflib 1.4.0

Copyright 2011 EPFL BBCF <webmaster dot bbcf at epfl dot ch>

bbcflib is a set of Python modules for accessing facilities used by the Bioinformatics and Biostatistics Core Facility˘(BBCF) at the EPFL.

bbcflib is released under the GNU General Public License 3.0. A copy of this license is in the LICENSE.txt file.

Installation

bbcflib requires: * Python >=2.6 * mailer >=0.6 (http://pypi.python.org/pypi/mailer) * bein (http://bbcf.epfl.ch/bein/) * numpy (http://numpy.scipy.org/)

bbcflib doesn’t have regular releases, since it is an internally used library. You should download the latest source code from GitHub, either by going to

http://github.com/bbcf/bbcflib

and clicking on “Downloads”, or by cloning the git repository with

$ git clone https://github.com/bbcf/bbcflib.git

Once you have the source code, run

$ python setup.py build $ sudo python setup.py install

to install it. If you need to install it in a particular directory, use

$ sudo python setup.py install –prefix=/prefix/path

Then the modules will go in /prefix/path/lib/pythonX.Y/site-packages, where X.Y is the version of Python you run it with.

To run the test suite, in the distribution directory, run

$ nosetests

Full documentation

The full documentation can be found [on our website](http://bbcf.epfl.ch/bbcflib).

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