Skip to main content

Common code shared among in-house Bioinformatics python packages

Project description


Common code shared among in-house Bioinformatics python packages, such as:

  • Parsing of FastQC output
  • Manipulating FASTA sequences
  • Building and using database of conversion GeneBank id (gi) to scientific name

Python version

This project is currently using Python 2.7


It is recommended to use virtualenv to create a clean python environment.

To install bioutils, use pip:

pip install bbcu.bioutils


To run unit tests, use:




This suite includes both unit and more time-consuming integration tests


The main script shipped with this project is, see its options by running:

The database is built by the script:

Project details

Release history Release notifications

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
bbcu.bioutils-1.0.4.tar.gz (14.0 kB) Copy SHA256 hash SHA256 Source None Jun 27, 2018

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page