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exome coverage calculation

Project description

This package has a set of modules to get coverage statistics for targeted DNA sequencing.

Main modules:

# Installation

if you already have a bcbio installation working:

git clone https://github.com/lpantano/bcbio.coverage.git

export PYTHONPATH=$PATH_to_clone_

# Usage make sure to use the bcbio python:

python /$PATH_to_clone/scripts/coverage.py

You can do an exec and add it to your path modifying the file scripts/coverage

Project details


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