A simple library and CLI tool to manipulate BED files
Project description
Bedparse
Bedparse is a simple python module and CLI tool to perform common operations on BED files.
It offers the following functionality:
- Filtering of transcripts based on annotations
- Joining of annotation files based on transcript names
- Conversion from GTF to BED format
- Conversion from UCSC to Ensembl chromosome names (and viceversa)
- Conversion from bed12 to bed6
- Promoter reporting
- Intron reporting
- CDS reporting
- UTR reporting
Installation
pip install bedparse
Documentation
Our documentation is hosted on Read the Docs.
We also have a short tutorial to guide you through the basic functions.
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