beehaviourlab 0.1.0

BEEhaviourLab provides tools for detecting, tracking, and analysing bee behaviour from video data.

BEEhaviourLab

BEEhaviourLab provides tools for detecting, tracking, and analysing bee behaviour from video data.

Documentation

Full documentation is published on GitHub Pages: https://beehaviourlab.github.io/BEEhaviourLab/

Installation

Install from PyPI:

pip install beehaviourlab

Install with docs or test extras:

pip install "beehaviourlab[docs]"
pip install "beehaviourlab[test]"

Install with dev extras (docs + tests):

pip install "beehaviourlab[dev]"

Install from source (recommended for development):

pip install -e .

For docs tooling:

pip install -e ".[docs]"

Tracking module

All tracking commands are available under the bee track group.

Common commands:

bee track run-pipeline --input /path/to/video.mp4 --output /path/to/output_dir
bee track run-yolo --model-path /path/to/model.pt --source-video /path/to/video.mp4 --output-path /path/to/out.csv
bee track fix-ids /path/to/tracking.csv --output /path/to/fixed.csv --num-objects 5
bee track extract-flow /path/to/fixed.csv --output /path/to/flow.csv
bee track speed-analysis /path/to/flow.csv --output-dir /path/to/output_dir
bee track visualise-tracking --video /path/to/video.mp4 --csv /path/to/fixed.csv --out /path/to/annotated.mp4

Batch processing

There is also a batch-processing command for running the tracking pipeline over all videos in a directory tree and writing outputs into a per-video subdirectory.

Usage:

bee track batch-process --input-dir /path/to/videos
bee track batch-process --input-dir /path/to/videos --filter hiveA
bee track batch-process --input-dir /path/to/videos --output-dir-name tracking_outputs