Problem-driven learning support CLI: concept dependency graph with per-project procedural/conceptual treatment
Project description
benkyo
Problem-driven learning support, grounded in the educational psychology literature.
A small Python CLI plus a bundle of Claude Code skills that together turn Claude into a research-grounded tutor — one that defers to the learner, calibrates against bias, and tracks a per-project map of "what to really understand" vs "what to just use as a tool."
Status: β. The CLI is English; the skills are currently Japanese-first.
What it is
Two pieces that depend on each other:
benkyoCLI — A Python tool (Click + SQLite + platformdirs) that owns a global concept-dependency graph and stores, per project, whether each concept is being treated procedurally (use as a formula) or conceptually (understand the why). It also stores problems, prereq/related edges, project goals, and free-text session metadata.- 5 Claude Code skills — Operational playbooks (under
.claude/skills/) that tell Claude when and how to drive the CLI on the learner's behalf. The learner converses naturally; Claude translates intents into CLI ops and applies decision rules drawn from published meta-analyses.
The learner never types benkyo themselves. They talk to Claude.
Why
Naive LLM tutors fail in characteristic ways that the educational psychology literature has named and measured:
- They trust the learner's "got it" too quickly (foresight bias / hindsight bias; Bjork, Dunlosky & Kornell, 2013).
- They jump to explanation instead of letting the learner attempt first (loses generation effect d ≈ 0.40; Bertsch et al., 2007), and they jump to instruction before problem-solving (loses Productive Failure g = 0.36–0.87 for conceptual; Sinha & Kapur, 2021).
- They keep scaffolding when the learner has become fluent (expertise reversal; Kalyuga, 2007).
- They lose track of which concepts the learner actually said they remembered between sessions (no delayed JOL; Rhodes & Tauber, 2011 report γ ≈ 0.93 for delayed vs much lower for immediate).
- They frame practice as a test, halving its effect (Bertsch et al., 2007: incidental d = 0.65 vs intentional d = 0.32).
- They miss the strongest teaching moments: high-confidence wrong answers (hypercorrection; Butterfield & Metcalfe, 2001).
benkyo addresses these by making the structural parts persistent (the CLI) and the behavioral parts explicit (the skills, with literature pointers next to each rule). The tutor's job is then to follow the skills, not improvise.
Install
1. Install the CLI
uv tool install benkyo
(or pipx install benkyo)
Verify:
benkyo --version
benkyo info
The DB lives at the OS-default app data location (override with BENKYO_DB or --db).
2. Install the Claude Code plugin
/plugin marketplace add youseiushida/benkyo
/plugin install benkyo
This installs all 5 skills. Restart Claude Code; the skills should appear in /help and in the Skill tool's options.
Quick start
Open Claude Code in a fresh directory and just talk:
You: ラプラス変換を勉強したい、何から始めれば?
Claude (via benkyo-project-init) will: ask 3–4 concrete goals to choose from, run a brief diagnostic, draft an initial concept graph, persist it via benkyo project add / benkyo concept add / etc., and hand off to benkyo-tutoring for the actual session.
From there, the learner just keeps talking. The 5 skills auto-trigger by trigger phrase / situation; the right one fires for the situation (see Skill bundle below).
Skill bundle
| Skill | Triggers on | What it does |
|---|---|---|
benkyo-project-init |
"○○を勉強したい", new subject, materials shared, post-long-gap resume | Extracts goal, drafts initial graph, sets the initial procedural/conceptual cut |
benkyo-tutoring |
Mid-session activity ("分からない", "教えて", "次", "分かった") | The default in-session behavior: PS-I vs I-PS mode choice, breakdown protocol, self-eval handling |
benkyo-treatment-shift |
"ちゃんと理解したい" (commit), "公式で OK" (release), or detected fatigue/transfer-failure signals | Changes a concept's depth-of-engagement; ensures prereqs exist before committing |
benkyo-graph-edit |
"これも追加" / "これ別物" / mentioned concept not in graph yet | Adds nodes/edges with identity check; granularity decisions |
benkyo-session-wrap |
"終わり", "また明日", abrupt interruption | Recap, delayed JOL seed, persist state to project.metadata |
Each SKILL.md references a shared library at .claude/skills/_benkyo-shared/references/ for decision tables, the natural-language ↔ internal-vocab map, and literature pointers. (Files prefixed with _ are not loaded as skills by Claude Code, so the bundle stays clean.)
Architecture
Learner (natural language)
↓ ↑
Claude Code ← skill auto-trigger by description
↓ ↑
SKILL.md → references/ (decision tables, nl-to-cli map, lit pointers)
↓
benkyo CLI (read/write)
↓
SQLite DB
Domain model in the DB (simplified):
concept_nodes(c1,c2, …) — global, shared across projectsproblem_nodes(p1,p2, …) — also globaledges—prereqorrelated, between nodesprojects(prj1, …) — owns goal problems, treatments, free-text metadataproject_concepts— per-project treatment (procedural/conceptual/ unset → default conceptual)
The "window" of a project is computed by BFS from goal problems via prereq edges; concepts marked procedural terminate traversal (they bound the depth the tutor needs to teach).
The full CLI surface is documented at .claude/skills/_benkyo-shared/references/cli-cheatsheet.md — or just run benkyo --help.
Research foundation
Each operational rule in the skills is backed by a published effect. The table below summarises; the literature pointer file (.claude/skills/_benkyo-shared/references/literature-pointers.md) gives the per-decision mapping.
| Operational rule | Primary source |
|---|---|
| Default PS-I for conceptual concepts; default I-PS for procedural | Sinha & Kapur (2021) |
| Build instruction on the learner's own attempt, not on the canonical solution | Sinha & Kapur (2021), β = 0.27–0.28 |
| Reduce scaffolding as the learner becomes fluent | Kalyuga (2007), expertise reversal |
| Rapid first-step diagnostic instead of long pre-tests | Kalyuga (2007), r = 0.92 with full tests |
| Solicit a delayed JOL at session end; verify at next session start | Rhodes & Tauber (2011), γ = 0.93 delayed |
| Brief anticipation before showing a worked example | Bjork et al. (2013); Kornell et al. (2009) |
| Frame probes incidentally — never say "test" | Bertsch et al. (2007), d = 0.65 vs 0.32 |
| Interleave related concepts within a session, not across days | Brunmair & Richter (2019) |
| Explicit contrasting correction for high-confidence wrong answers | Butterfield & Metcalfe (2001), hypercorrection |
| 1–6 day retention interval for probe scheduling | Adesope et al. (2017), g = 0.82 peak |
| Match probe format to intended use (TAP) | Adesope et al. (2017), g = 0.63 vs 0.53 |
| Treat learner self-evaluation as low-trust evidence | Bjork et al. (2013), 3 biases |
References
Adesope, O. O., Trevisan, D. A., & Sundararajan, N. (2017). Rethinking the use of tests: A meta-analysis of practice testing. Review of Educational Research, 87(3), 659–701. https://doi.org/10.3102/0034654316689306
Bertsch, S., Pesta, B. J., Wiscott, R., & McDaniel, M. A. (2007). The generation effect: A meta-analytic review. Memory & Cognition, 35(2), 201–210. https://doi.org/10.3758/BF03193441
Bjork, R. A., & Bjork, E. L. (1992). A new theory of disuse and an old theory of stimulus fluctuation. In A. F. Healy, S. M. Kosslyn, & R. M. Shiffrin (Eds.), From learning processes to cognitive processes: Essays in honor of William K. Estes (Vol. 2, pp. 35–67). Erlbaum.
Bjork, R. A., Dunlosky, J., & Kornell, N. (2013). Self-regulated learning: Beliefs, techniques, and illusions. Annual Review of Psychology, 64, 417–444. https://doi.org/10.1146/annurev-psych-113011-143823
Brunmair, M., & Richter, T. (2019). Similarity matters: A meta-analysis of interleaved learning and its moderators. Psychological Bulletin, 145(11), 1029–1052. https://doi.org/10.1037/bul0000209
Butterfield, B., & Metcalfe, J. (2001). Errors committed with high confidence are hypercorrected. Journal of Experimental Psychology: Learning, Memory, and Cognition, 27(6), 1491–1494. https://doi.org/10.1037/0278-7393.27.6.1491
Kalyuga, S. (2007). Expertise reversal effect and its implications for learner-tailored instruction. Educational Psychology Review, 19(4), 509–539. https://doi.org/10.1007/s10648-007-9054-3
Murre, J. M. J., & Dros, J. (2015). Replication and analysis of Ebbinghaus' forgetting curve. PLOS ONE, 10(7), e0120644. https://doi.org/10.1371/journal.pone.0120644
Rhodes, M. G., & Tauber, S. K. (2011). The influence of delaying judgments of learning on metacognitive accuracy: A meta-analytic review. Psychological Bulletin, 137(1), 131–148. https://doi.org/10.1037/a0021705
Sinha, T., & Kapur, M. (2021). When problem solving followed by instruction works: Evidence for productive failure. Review of Educational Research, 91(5), 761–798. https://doi.org/10.3102/00346543211019105
Limitations
- Self-managed scheduling: benkyo doesn't yet implement a spaced-retrieval scheduler (FSRS-style). Spacing recommendations come from session-wrap and project-init heuristics, not from a per-card forgetting model.
- No event log: per-event history isn't persisted; state lives in
project.metadataas free text. The session-wrap skill writes structured notes there, but they're not queryable as events. - Japanese-first skills: the SKILL.md files and decision tables are currently written in Japanese (the primary user language). The CLI itself is English.
- Two-layer brittleness: if the CLI changes its surface and the skill's cheat-sheet isn't updated, the skill's
benkyoinvocations will fail. Run the test suite + the skill evals together on changes.
Development
uv sync --dev
uv run pytest # 134 tests
benkyo --help
Skill files live at .claude/skills/benkyo-*/SKILL.md. Each skill has evals/evals.json (3 single-turn scenarios) and evals/trigger-eval.json (16 trigger discrimination cases) — see _benkyo-shared/evals/TRIGGER-OPTIMIZATION.md if you want to run example-skills:skill-creator's run_loop.py against them.
License
MIT. See LICENSE.
The works cited in References belong to their respective authors and publishers. Cite the originals when reusing any quantitative claim.
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