Python command line scripts for the B-Fabric API

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Project description

bfabricPy

PR Checks Nightly Integration Tests EDBT'10 JIB PyPI - bfabric PyPI - bfabric-scripts PyPI - bfabric-app-runner

Documentation

Package Link Change Log
bfabric https://fgcz.github.io/bfabricPy bfabric/docs/changelog.md
bfabric-scripts https://fgcz.github.io/bfabricPy bfabric_scripts/docs/changelog.md
bfabric-app-runner https://fgcz.github.io/bfabricPy/app_runner/ bfabric_app_runner/docs/changelog.md

Introduction

This package implements a Python interface to the B-Fabric system. Several pieces of functionality are available:

  • Python API:
    • General client for all B-Fabric web service operations (CRUD) and configuration management.
    • A relational API for low-boilerplate read access to the B-Fabric system.
  • Scripts: Several scripts we use more or less frequently to interact with the system.
  • A REST API: A REST API to interact with the B-Fabric system. This allows us to interact with B-Fabric from R using bfabricShiny.

Howto cite?

Panse, Christian, Trachsel, Christian and Türker, Can. "Bridging data management platforms and visualization tools to enable ad-hoc and smart analytics in life sciences" Journal of Integrative Bioinformatics, 2022, pp. 20220031. doi: 10.1515/jib-2022-0031.

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