Python command line scripts for the B-Fabric API
Project description
bfabricPy
Documentation
| Package | Link | Change Log |
|---|---|---|
| bfabric | https://fgcz.github.io/bfabricPy | bfabric/docs/changelog.md |
| bfabric-scripts | https://fgcz.github.io/bfabricPy | bfabric_scripts/docs/changelog.md |
| bfabric-app-runner | https://fgcz.github.io/bfabricPy/app_runner/ | bfabric_app_runner/docs/changelog.md |
Dev preview (from main): https://fgcz.github.io/bfabricPy/dev/ | https://fgcz.github.io/bfabricPy/dev/app_runner/
Introduction
This package implements a Python interface to the B-Fabric system. Several pieces of functionality are available:
- Python API:
- General client for all B-Fabric web service operations (CRUD) and configuration management.
- A relational API for low-boilerplate read access to the B-Fabric system.
- Scripts: Several scripts we use more or less frequently to interact with the system.
- A REST API: A REST API to interact with the B-Fabric system. This allows us to interact with B-Fabric from R using bfabricShiny.
Howto cite?
Panse, Christian, Trachsel, Christian and Türker, Can. "Bridging data management platforms and visualization tools to enable ad-hoc and smart analytics in life sciences" Journal of Integrative Bioinformatics, 2022, pp. 20220031. doi: 10.1515/jib-2022-0031.
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