bgc-viewer 0.1.9

A viewer to explore and visualize Biosynthetic Gene Cluster data

BGC Viewer

A viewer for biosynthetic gene cluster (BGC) data.

Installation & run

Using Python 3.11 or higher, install and run the BGC Viewer as follows:

pip install bgc-viewer
bgc-viewer

This will start the BGC Viewer server, to which you can connect with your web browser.

Configuration

Environment variables can be set to change the configuration of the viewer. A convenient way to change them is to put a file called .env in the directory from which you are running the application.

BGCV_HOST=localhost       # Server host (default: localhost)
BGCV_PORT=5005            # Server port (default: 5005)
BGCV_DEBUG_MODE=False     # Enable dev/debug mode (default: False)
BGCV_PUBLIC_MODE=False    # In public mode, there won't be an option to access the
                          # file system; the data directory will be fixed (default: False)
BGCV_DATA_DIR=/data_dir/  # In public mode, this data directory will be used
BGCV_ALLOWED_ORIGINS=https://yourdomain.com # Allowed CORS origins, relevant for public mode

Development

See the repository main README for development details.

uv run python -m bgc_viewer.app

License

Apache 2.0