A DataFrame API for Google BigQuery
Project description
Bigquery-frame
What is it ?
This project started as a POC that aimed to showcase the wonders that could be done if BigQuery provided a DataFrame API in Python similar to the one already available with PySpark or Snowpark. With time, I started to add more and more cool features :sunglasses:.
I tried to reproduce the most commonly used methods of the Spark DataFrame object. I aimed at making something as close as possible as PySpark, and tried to keep exactly the same naming and docstrings as PySpark's DataFrames.
For instance, this is a working example of PySpark code:
from pyspark.sql import SparkSession
from pyspark.sql import functions as f
spark = SparkSession.builder.master("local[1]").getOrCreate()
df = spark.sql("""
SELECT 1 as id, "Bulbasaur" as name, ARRAY("Grass", "Poison") as types, NULL as other_col
UNION ALL
SELECT 2 as id, "Ivysaur" as name, ARRAY("Grass", "Poison") as types, NULL as other_col
""")
df.select("id", "name", "types").createOrReplaceTempView("pokedex")
df2 = spark.sql("""SELECT * FROM pokedex""")\
.withColumn("nb_types", f.expr("SIZE(types)"))\
.withColumn("name", f.expr("LOWER(name)"))
df2.show()
# +---+---------+---------------+--------+
# | id| name| types|nb_types|
# +---+---------+---------------+--------+
# | 1|bulbasaur|[Grass, Poison]| 2|
# | 2| ivysaur|[Grass, Poison]| 2|
# +---+---------+---------------+--------+
And this is an equivalent working example using bigquery_frame, that runs on Google Big Query!
from bigquery_frame import BigQueryBuilder
from bigquery_frame.auth import get_bq_client
from bigquery_frame import functions as f
bigquery = BigQueryBuilder(get_bq_client())
df = bigquery.sql("""
SELECT 1 as id, "Bulbasaur" as name, ["Grass", "Poison"] as types, NULL as other_col
UNION ALL
SELECT 2 as id, "Ivysaur" as name, ["Grass", "Poison"] as types, NULL as other_col
""")
df.select("id", "name", "types").createOrReplaceTempView("pokedex")
df2 = bigquery.sql("""SELECT * FROM pokedex""")\
.withColumn("nb_types", f.expr("ARRAY_LENGTH(types)"))\
.withColumn("name", f.expr("LOWER(name)"), replace=True)
df2.show()
# +----+-----------+---------------------+----------+
# | id | name | types | nb_types |
# +----+-----------+---------------------+----------+
# | 1 | bulbasaur | ['Grass', 'Poison'] | 2 |
# | 2 | ivysaur | ['Grass', 'Poison'] | 2 |
# +----+-----------+---------------------+----------+
What's so cool about DataFrames ?
I believe that DataFrames are super cool to organise SQL code as it allows us to several things that are much harder, or even impossible, in pure-SQL:
- on-the-fly introspection
- chaining operations
- generic transformations
- higher level abstraction
But that deserves a blog article.
Installation
bigquery-frame is available on PyPi.
1. Install bigquery-frame
pip install bigquery-frame
2. Configure access to your BigQuery project.
There are three possible methods detailed in AUTH.md:
The quickest way
Either run gcloud auth application-default login
and set the environment variable GCP_PROJECT
to your project name.
If you do that bigquery-frame will inherit use own credentials.
The safest way
Create a service account, configure its rights and set the environment variable GCP_CREDENTIALS_PATH
to point to
your service account's credential file.
The custom way
Create a google.cloud.bigquery.Client
object yourself and pass it to the BigQueryBuilder
.
3. Open your favorite python console / notebook and enjoy
from bigquery_frame import BigQueryBuilder
bq = BigQueryBuilder()
df = bq.table('bigquery-public-data.utility_us.country_code_iso')
df.printSchema()
df.show()
How does it work ?
Very simply, by generating SQL queries that are sent to BigQuery.
You can get the query by calling the method DataFrame.compile()
.
For instance, if we reuse the example from the beginning:
print(df2.compile())
This will print the following SQL query:
WITH pokedex AS (
WITH _default_alias_1 AS (
SELECT 1 as id, "Bulbasaur" as name, ["Grass", "Poison"] as types, NULL as other_col
UNION ALL
SELECT 2 as id, "Ivysaur" as name, ["Grass", "Poison"] as types, NULL as other_col
)
SELECT
id,
name,
types
FROM _default_alias_1
)
, _default_alias_3 AS (
SELECT * FROM pokedex
)
, _default_alias_4 AS (
SELECT
*,
ARRAY_LENGTH(types) AS nb_types
FROM _default_alias_3
)
SELECT
* REPLACE (
LOWER(name) AS name
)
FROM _default_alias_4
Cool Features
This feature list is arbitrarily sorted by decreasing order of coolness.
Data Diff (NEW!)
Just like git diff, but for data!
Performs a diff between two dataframes.
It can be called from Python or directly via the command line if you made a pip install bigquery-frame
.
Example with the command line:
Please make sure you followed the Installation section first.
In this example, I compared two snapshots of the public table bigquery-public-data.utility_us.country_code_iso
made at 6 days interval and noticed that a bug had been introduced, as you can see from the diff: the new values
for the columns continent_code
and continent_name
look like they have been inverted.
$ bq-diff --tables test_us.country_code_iso_snapshot_20220921 test_us.country_code_iso_snapshot_20220927 --join-cols country_name
Analyzing differences...
We will try to find the differences by joining the DataFrames together using the provided column: country_name
100%|███████████████████████████████████████████████████████████████████████████████████| 1/1 [00:04<00:00, 4.66s/it]
Schema: ok (10)
diff NOT ok
Summary:
Row count ok: 278 rows
28 (10.07%) rows are identical
250 (89.93%) rows have changed
100%|███████████████████████████████████████████████████████████████████████████████████| 1/1 [00:04<00:00, 4.67s/it]
Found the following differences:
+----------------+---------------+---------------+--------------------+----------------+
| column_name | total_nb_diff | left | right | nb_differences |
+----------------+---------------+---------------+--------------------+----------------+
| continent_code | 250 | NA | Caribbean | 26 |
| continent_code | 250 | AF | Eastern Africa | 20 |
| continent_code | 250 | AS | Western Asia | 18 |
| continent_code | 250 | AF | Western Africa | 17 |
| continent_code | 250 | EU | Southern Europe | 16 |
| continent_code | 250 | EU | Northern Europe | 15 |
| continent_code | 250 | SA | South America | 14 |
| continent_code | 250 | AS | South-Eastern Asia | 11 |
| continent_code | 250 | EU | Eastern Europe | 10 |
| continent_code | 250 | OC | Polynesia | 10 |
| continent_name | 250 | Africa | AF | 58 |
| continent_name | 250 | Asia | AS | 54 |
| continent_name | 250 | Europe | EU | 53 |
| continent_name | 250 | North America | NA | 39 |
| continent_name | 250 | Oceania | OC | 26 |
| continent_name | 250 | South America | SA | 15 |
| continent_name | 250 | Antarctica | AN | 5 |
+----------------+---------------+---------------+--------------------+----------------+
An equivalent analysis made with Python is available at examples/data_diff/country_code_iso.py.
Example with Python:
Please make sure you followed the Installation section first.
from bigquery_frame.data_diff import DataframeComparator
from bigquery_frame import BigQueryBuilder
from bigquery_frame.auth import get_bq_client
bq = BigQueryBuilder(get_bq_client())
df1 = bq.sql("""
SELECT * FROM UNNEST ([
STRUCT(1 as id, [STRUCT(1 as a, 2 as b, 3 as c)] as my_array),
STRUCT(2 as id, [STRUCT(1 as a, 2 as b, 3 as c)] as my_array),
STRUCT(3 as id, [STRUCT(1 as a, 2 as b, 3 as c)] as my_array)
])
""")
df2 = bq.sql("""
SELECT * FROM UNNEST ([
STRUCT(1 as id, [STRUCT(1 as a, 2 as b, 3 as c, 4 as d)] as my_array),
STRUCT(2 as id, [STRUCT(2 as a, 2 as b, 3 as c, 4 as d)] as my_array),
STRUCT(4 as id, [STRUCT(1 as a, 2 as b, 3 as c, 4 as d)] as my_array)
])
""")
df1.show()
# +----+----------------------------+
# | id | my_array |
# +----+----------------------------+
# | 1 | [{'a': 1, 'b': 2, 'c': 3}] |
# | 2 | [{'a': 1, 'b': 2, 'c': 3}] |
# | 3 | [{'a': 1, 'b': 2, 'c': 3}] |
# +----+----------------------------+
df2.show()
# +----+------------------------------------+
# | id | my_array |
# +----+------------------------------------+
# | 1 | [{'a': 1, 'b': 2, 'c': 3, 'd': 4}] |
# | 2 | [{'a': 2, 'b': 2, 'c': 3, 'd': 4}] |
# | 4 | [{'a': 1, 'b': 2, 'c': 3, 'd': 4}] |
# +----+------------------------------------+
diff_result = DataframeComparator().compare_df(df1, df2)
diff_result.display()
Will produce the following output:
Schema has changed:
@@ -2,3 +2,4 @@
my_array!.a INTEGER
my_array!.b INTEGER
my_array!.c INTEGER
+my_array!.d INTEGER
WARNING: columns that do not match both sides will be ignored
diff NOT ok
Summary:
Row count ok: 3 rows
1 (25.0%) rows are identical
1 (25.0%) rows have changed
1 (25.0%) rows are only in 'left'
1 (25.0%) rows are only in 'right
100%|██████████| 1/1 [00:04<00:00, 4.26s/it]
Found the following differences:
+-------------+---------------+-----------------------+-----------------------+----------------+
| column_name | total_nb_diff | left | right | nb_differences |
+-------------+---------------+-----------------------+-----------------------+----------------+
| my_array | 1 | [{"a":1,"b":2,"c":3}] | [{"a":2,"b":2,"c":3}] | 1 |
+-------------+---------------+-----------------------+-----------------------+----------------+
1 rows were only found in 'left' :
Analyzing 4 columns ...
+---------------+-------------+-------------+-------+----------------+------------+-----+-----+------------------------------+
| column_number | column_name | column_type | count | count_distinct | count_null | min | max | approx_top_100 |
+---------------+-------------+-------------+-------+----------------+------------+-----+-----+------------------------------+
| 0 | id | INTEGER | 1 | 1 | 0 | 3 | 3 | [{'value': '3', 'count': 1}] |
| 1 | my_array!.a | INTEGER | 1 | 1 | 0 | 1 | 1 | [{'value': '1', 'count': 1}] |
| 2 | my_array!.b | INTEGER | 1 | 1 | 0 | 2 | 2 | [{'value': '2', 'count': 1}] |
| 3 | my_array!.c | INTEGER | 1 | 1 | 0 | 3 | 3 | [{'value': '3', 'count': 1}] |
+---------------+-------------+-------------+-------+----------------+------------+-----+-----+------------------------------+
1 rows were only found in 'right':
Analyzing 4 columns ...
+---------------+-------------+-------------+-------+----------------+------------+-----+-----+------------------------------+
| column_number | column_name | column_type | count | count_distinct | count_null | min | max | approx_top_100 |
+---------------+-------------+-------------+-------+----------------+------------+-----+-----+------------------------------+
| 0 | id | INTEGER | 1 | 1 | 0 | 4 | 4 | [{'value': '4', 'count': 1}] |
| 1 | my_array!.a | INTEGER | 1 | 1 | 0 | 1 | 1 | [{'value': '1', 'count': 1}] |
| 2 | my_array!.b | INTEGER | 1 | 1 | 0 | 2 | 2 | [{'value': '2', 'count': 1}] |
| 3 | my_array!.c | INTEGER | 1 | 1 | 0 | 3 | 3 | [{'value': '3', 'count': 1}] |
+---------------+-------------+-------------+-------+----------------+------------+-----+-----+------------------------------+
Features
- Full support of nested records
- (improvable) support for repeated records
- Optimized to work even on huge table with more than 1000 columns
Analyze
Perform an analysis on a DataFrame, return aggregated stats for each column, such as count, count distinct, count null, min, max, top 100 most frequent values.
- Optimized to work on wide tables
- Custom aggregation functions can be added
- Aggregations can be grouped against one or several columns
Example:
from bigquery_frame.transformations_impl.analyze import __get_test_df
from bigquery_frame.transformations import analyze
df = __get_test_df()
df.show()
# +----+------------+---------------------+--------------------------------------------+
# | id | name | types | evolution |
# +----+------------+---------------------+--------------------------------------------+
# | 1 | Bulbasaur | ['Grass', 'Poison'] | {'can_evolve': True, 'evolves_from': None} |
# | 2 | Ivysaur | ['Grass', 'Poison'] | {'can_evolve': True, 'evolves_from': 1} |
# | 3 | Venusaur | ['Grass', 'Poison'] | {'can_evolve': False, 'evolves_from': 2} |
# | 4 | Charmander | ['Fire'] | {'can_evolve': True, 'evolves_from': None} |
# | 5 | Charmeleon | ['Fire'] | {'can_evolve': True, 'evolves_from': 4} |
# | 6 | Charizard | ['Fire', 'Flying'] | {'can_evolve': False, 'evolves_from': 5} |
# | 7 | Squirtle | ['Water'] | {'can_evolve': True, 'evolves_from': None} |
# | 8 | Wartortle | ['Water'] | {'can_evolve': True, 'evolves_from': 7} |
# | 9 | Blastoise | ['Water'] | {'can_evolve': False, 'evolves_from': 8} |
# +----+------------+---------------------+--------------------------------------------+
analyze(df).show()
# +---------------+------------------------+-------------+-------+----------------+------------+-----------+-----------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
# | column_number | column_name | column_type | count | count_distinct | count_null | min | max | approx_top_100 |
# +---------------+------------------------+-------------+-------+----------------+------------+-----------+-----------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
# | 0 | id | INTEGER | 9 | 9 | 0 | 1 | 9 | [{'value': '1', 'count': 1}, {'value': '2', 'count': 1}, {'value': '3', 'count': 1}, {'value': '4', 'count': 1}, {'value': '5', 'count': 1}, {'value': '6', 'count': 1}, {'value': '7', 'count': 1}, {'value': '8', 'count': 1}, {'value': '9', 'count': 1}] |
# | 1 | name | STRING | 9 | 9 | 0 | Blastoise | Wartortle | [{'value': 'Bulbasaur', 'count': 1}, {'value': 'Ivysaur', 'count': 1}, {'value': 'Venusaur', 'count': 1}, {'value': 'Charmander', 'count': 1}, {'value': 'Charmeleon', 'count': 1}, {'value': 'Charizard', 'count': 1}, {'value': 'Squirtle', 'count': 1}, {'value': 'Wartortle', 'count': 1}, {'value': 'Blastoise', 'count': 1}] |
# | 2 | types! | STRING | 13 | 5 | 0 | Fire | Water | [{'value': 'Grass', 'count': 3}, {'value': 'Poison', 'count': 3}, {'value': 'Fire', 'count': 3}, {'value': 'Water', 'count': 3}, {'value': 'Flying', 'count': 1}] |
# | 3 | evolution.can_evolve | BOOLEAN | 9 | 2 | 0 | false | true | [{'value': 'true', 'count': 6}, {'value': 'false', 'count': 3}] |
# | 4 | evolution.evolves_from | INTEGER | 9 | 6 | 3 | 1 | 8 | [{'value': 'NULL', 'count': 3}, {'value': '1', 'count': 1}, {'value': '2', 'count': 1}, {'value': '4', 'count': 1}, {'value': '5', 'count': 1}, {'value': '7', 'count': 1}, {'value': '8', 'count': 1}] |
# +---------------+------------------------+-------------+-------+----------------+------------+-----------+-----------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
Example with custom aggregation and column groups:
from bigquery_frame.transformations_impl import analyze_aggs
from bigquery_frame.transformations import analyze
aggs = [
analyze_aggs.column_number,
analyze_aggs.column_name,
analyze_aggs.count,
analyze_aggs.count_distinct,
analyze_aggs.count_null,
]
analyze(df, group_by="evolution.can_evolve", _aggs=aggs).orderBy('group.can_evolve', 'column_number').show()
# +-----------------------+---------------+------------------------+-------+----------------+------------+
# | group | column_number | column_name | count | count_distinct | count_null |
# +-----------------------+---------------+------------------------+-------+----------------+------------+
# | {'can_evolve': False} | 0 | id | 3 | 3 | 0 |
# | {'can_evolve': False} | 1 | name | 3 | 3 | 0 |
# | {'can_evolve': False} | 2 | types! | 5 | 5 | 0 |
# | {'can_evolve': False} | 4 | evolution.evolves_from | 3 | 3 | 0 |
# | {'can_evolve': True} | 0 | id | 6 | 6 | 0 |
# | {'can_evolve': True} | 1 | name | 6 | 6 | 0 |
# | {'can_evolve': True} | 2 | types! | 8 | 4 | 0 |
# | {'can_evolve': True} | 4 | evolution.evolves_from | 6 | 3 | 3 |
# +-----------------------+---------------+------------------------+-------+----------------+------------+
Billing
All queries are run on BigQuery, so BigQuery usual billing will apply on your queries. The following operations trigger a query execution:
df.show()
df.persist()
df.createOrReplaceTempTable()
df.write
The operation df.schema
also triggers a query execution, but it uses a LIMIT 0
, which will make BigQuery return
0 rows and charge 0 cent for it.
Query caching
Since version 0.4.0, the queries generated by bigquery-frame are now 100% deterministic, so executing the same DataFrame code twice should send the same SQL query to BigQuery, thus leveraging BigQuery's query caching.
Accessing billing stats
Since version 0.4.2, the BigQueryBuilder gather statistics about billing.
Example:
from bigquery_frame import BigQueryBuilder
bq = BigQueryBuilder()
df = bq.sql(f"SELECT 1 as a").persist()
df.show()
print(bq.stats.human_readable())
will print:
+---+
| a |
+---+
| 1 |
+---+
Estimated bytes processed : 8.00 B
Total bytes processed : 8.00 B
Total bytes billed : 10.00 MiB
The number of bytes billed is larger because BigQuery applies a minimal pricing on all queries run
to account for execution overhead (except those with LIMIT 0
).
More details in the BigQuery Documentation.
Cost of advanced transformations
Some advanced transformations, like analyze
and DataframeComparator.compare_df
, persist intermediary results.
-
analyze
scans each column of the table exactly once, and stores very small intermediary results, which should cost no more than 10 MiB per 50 column in the table analyzed. This is negligible and the cost of analyze should be comparable to that of a regularSELECT *
. -
DataframeComparator.compare_df
persists multiple intermediary results, which should never exceed 2 times the size of the input tables. It also has a built-in security to prevent any combinatorial explosion, should the user provide a join key that has duplicate. Overall, the cost of a diff should be comparable to scanning both input tables 4 to 6 times.
Debugging
If you have already used Spark, you probably remember times when you tried to troubleshoot a complex transformation pipeline but had trouble finding at which exact line the bug was hidden, because Spark's lazy evaluation often makes it crash several steps after the actual buggy line.
To make debugging easier, I added a debug
flag that when set to True, will validate each transformation
step instead of doing a lazy evaluation at the end.
Examples:
from bigquery_frame import BigQueryBuilder
bq = BigQueryBuilder(client)
df1 = bq.sql("""SELECT 1 as a""")
# This line is wrong, but since we don't fetch any result here, the error will be caught later.
df2 = df1.select("b")
# The execution fails at this line.
df2.show()
from bigquery_frame import BigQueryBuilder
bq = BigQueryBuilder(client)
# This time, we activate the "debug mode"
bq.debug = True
df1 = bq.sql("""SELECT 1 as a""")
# Since debug mode is enabled, the execution will fail at this line.
df2 = df1.select("b")
df2.show()
Of course, this is costly in performance, even if query validation does not
incur extra query costs, and it is advised to keep this
option to False
by default and use it only for troubleshooting.
Known limitations
This project started as a POC, and while I keep improving it with time, I did take some shortcuts and did not try to optimize the query length. In particular, bigquery-frame generates a lot of CTEs, and any serious project trying to use it might reach the maximum query length very quickly.
Here is a list of other known limitations, please also see the Further developments section for a list of missing features.
DataFrame.withColumn
:- unlike in Spark, replacing an existing column is not done
automatically, an extra argument
replace=True
must be passed.
- unlike in Spark, replacing an existing column is not done
automatically, an extra argument
DataFrame.createOrReplaceTempView
:- I kept the same name as Spark for consistency, but it does not create an actual view on BigQuery, it just emulates Spark's behaviour by using a CTE. Because of this, if you replace a temp view that already exists, the new view can not derive from the old view (while in Spark it is possible).
DataFrame.join
:- When doing a select after a join, table prefixes MUST always be used on column names. For this reason, users SHOULD always make sure the DataFrames they are joining on are properly aliased
- When chaining multiple joins, the name of the first DataFrame is not available in the select clause
Further developments
Functions not supported yet:
DataFrame.groupBy
- UDTFs such as
explode
,explode_outer
, etc.
Other improvements:
- One main improvement would be to make DataFrame more schema-conscious.
Currently, the only way we get to know a DataFrame's schema is by making
a round-trip with BigQuery. Ideally, we could improve this so that simple
well-defined transformations would update the DataFrame schema directly
on the client side. Of course, we would always have to ask BigQuery when
evaluating raw SQL expressions (e.g.
BigQueryBuilder.sql
,functions.expr
). - Another improvement would be to optimize the size of the generated query and being able to generate only one single SELECT statement combining multiple steps like JOINS, GROUP BY, HAVING etc. rather than doing one CTE for each step.
Also, it would be cool to expand this to other SQL engines than BigQuery (contributors are welcome :wink: ).
Similar projects
Ibis project
ibis-project provides a Python API inspired by pandas and dplyr that generates queries against multiple analytics (SQL or DataFrame-based) backends, such as Pandas, Dask, PySpark and BigQuery.
I played with ibis very shortly, so I might have misunderstood some parts, but from my understanding, I noted the following differences between bigquery-frame and ibis-bigquery:
Unlike bigquery-frame (at least for now), Ibis is always schema-conscious which has several upsides:
- If you select a column that does not exist from a DataFrame, ibis will detect it immediately, while bigquery-frame will only see once the query is executed, unless if the debug mode is active.
- Ibis is capable of finding from which DataFrame a column comes from after a join, while bigquery-frame isn't at the moment.
- Ibis's query compilation is also more advanced and the SQL queries generated by ibis are much shorter and cleaner than the ones generated by bigquery-frame for the moment.
But this also have some downsides:
- ibis-bigquery currently does not support mixing raw SQL expression in your transformation. This might be added in the future, as ibis is already capable of mixing raw SQL expression with some other backends. Since bigquery-frame is not schema-conscious, support for raw SQL expression was very easy to add. This is especially useful if you want to use "that brand-new SQL feature that was just added in BigQuery": with bigquery-frame you can always revert to pure-SQL, while with ibis you must wait until that feature is integrated into ibis-bigquery.
Another key difference between ibis-bigquery and bigquery-frame is that ibis-bigquery is part of a larger
cross-platform framework, while bigquery-frame only support BigQuery at the moment. This allows bigquery-frame
to support more easily some of BigQuery's exotic features. For instance bigquery-frame offers a good
support for nested repeated fields (array of structs) thanks to the flatten_schema
function,
and the functions.transform
, DataFrame.with_nested_columns
and DataFrame.select_nested_columns
functions.
I plan to address most of bigquery-frame's downsides in the future, whenever I get the time.
Why did I make this ?
I hope that it will motivate the teams working on BigQuery (or Redshift, or Azure Synapse) to propose a real python DataFrame API on top of their massively parallel SQL engines. But not something that generates ugly SQL strings, more something like Spark Catalyst, which directly generates logical plans out of the DataFrame API without passing through the "SQL string" step.
After starting this POC, I realized Snowflake already understood this and developed Snowpark, a Java/Scala (and soon Python) API to run complex workflows on Snowflake, and Snowpark's DataFrame API which was clearly borrowed from Spark's DataFrame (= DataSet[Row]) API (we recognize several key method names: cache, createOrReplaceTempView, where/filter, collect, toLocalIterator).
I believe such project could open the gate to hundreds of very cool applications. For instance, did you know that, in its early versions at least, Dataiku Shaker was just a GUI that chained transformations on Pandas DataFrame, and later Spark DataFrame ?
Another possible evolution would be to make a DataFrame API capable of speaking multiple SQL dialects. By using it, projects that generate SQL for multiple platforms, like Malloy, could all use the same DataFrame abstraction. Adding support for a new SQL platform would immediately allow all the project based on it to support this new platform.
I recently discovered several other projects that have similar goals:
- ibis-project that provides a unified pandas-like API on top of several backends such as Pandas, Dask, Postgres, DuckDB, PySpark, BigQuery (cf the comparison above)
- substrait aims at providing a formal universal serialization specification for expressing relational-algebra transformations. The idea is to abstract the query plan from the syntax in which it was expressed by using a single common query plan representation for everyone. Maybe one day, if this project becomes mainstream enough, we will have code written with PySpark, Pandas or SQL generate an abstract query plan using the same specification, which could then be run by Dask, BigQuery, or Snowflake. Personally, I'm afraid that the industry is moving too fast to allow such initiative to catch up and become prevalent one day, but of course I would LOVE to be proven wrong there.
Given that the ibis-project is much more advanced than mine when it comes to multilingualism, I think I will pursue my efforts into deep-diving more advanced features for BigQuery only. Perhaps one day I or someone else will port them to the ibis-project.
Would anyone be interested in trying to POC an extension of this project to RedShift, Postgres, Azure Synapse, or any other SQL engines SQL engine, I would be very glad to discuss it.
Changelog
0.5.0
Improvements:
- Added support for
DataFrame.groupBy
. It also supportsDataFrame.groupBy(...).pivot(...)
. transformations.pivot
now support doing multiple aggregations at the same time. It's signature has changed: The argumentsagg_fun
andagg_col
have been replaced withaggs
and the argumentimplem_version
has been removed: The first implementation version has been removed.- Added new method
DataFrame.show_string
that returns the string resulting fromDataFrame.show
without printing it - Added new method
DataFrame.transform
that provides a concise syntax for chaining custom transformations. functions.array_agg
now support passing multiple columns in the order_by argument.- Added new
functions
:avg
andmean
lower
andupper
regexp_replace
explode
,explode_outer
,posexplode_outer
andposexplode_outer
- method
functions.lit
can now generate most BigQuery types:- STRING, BYTES
- DATE, TIME, DATETIME, TIMESTAMP
- INT, FLOAT, BIGNUMERIC
- ARRAY and STRUCTS
- Added new method
Column.isin
. - Improved
functions.sort_array
andfunctions.transform
, they can now be correctly used together. But their signature has changed. They now take functions as arguments instead of strings. - Complete overhaul of data-diff:
- data-diff now supports complex data types. Declaring a repeated field (e.g.
"s!.id"
in join_cols will now explode the corresponding array and perform the diff on it). - When columns are removed or renamed, they are now still displayed in the per-column diff report.
- data-diff now generates an HTML report: it is fully standalone and can be opened without any internet connection.
- A user-friendly error is now raised when one of the
join_cols
does not exist.
- data-diff now supports complex data types. Declaring a repeated field (e.g.
Breaking changes:
- Dropped support for Python 3.7 and 3.8, but added support for Python 3.11 and 3.12
DataFrame.join
does not supports string expression. For instancedf1.join(df2, on="col1 == col2")
must be rewrittendf1.join(df2, on=df1["col1"] == df2["col2"])
- The signature of the
transformations.pivot
method has changed: The argumentsagg_fun
andagg_col
have been replaced withaggs
and the argumentimplem_version
has been removed: The first implementation version has been removed. - The signature of the
functions.sort_array
method has changed. The second argumentsort_cols: Union[Column, List[Column]]
was replaced withsort_keys: Optional[Callable[[Column], Union[Column, List[Column]]]] = None
. - The signature of the
functions.transform
method has changed. The second argumenttransform_col: Column
was replaced withfunc: Callable[[Column], Column]
- data-diff:
bigquery_frame.data_diff.DataframeComparator
object has been removed. Please use directly the methodbigquery_frame.data_diff.compare_dataframes
.- package
bigquery_frame.data_diff.diff_results
has been renamed todiff_result
.
Bugfixes:
transformations.unpivot
now works with an emptypivot_columns
list.
0.4.4
- Breaking change: The
flatten_schema
method has been moved fromtransformations
todata_type_utils
.
0.4.3
- Added
functions.array_agg
method. - added a first graph algorithm:
graph.connected_component
computes the connected components in a graph using the "small star - large star" algorithm which is conjectured to perform inO(n log(n))
. - Added
functions.from_base_32
andfunctions.from_base_64
.
0.4.2
- The BigQueryBuilder now aggregates stats about the total number of bytes processed and billed.
This is useful to check how much you spend after running a diff (^ ^)
It can be displayed withprint(bq.stats.human_readable())
- Added a
BigQueryBuilder.debug
attribute. When set to true, each step of a DataFrame transformation flow will be validated instead of compiling the query lazily when we need to fetch a result. - Added a
bq-diff
command that can be called directly from bash. Runbq-diff --help
for more information.
0.4.1
- Added
DataFrame.write
feature. It currently supports partitioning, table-level options, and several insertion modes:append
: Append contents of this :class:DataFrame
to existing table.overwrite
: Replace destination table with the new data if it already exists.error
orerrorifexists
: Throw an exception if destination table already exists.ignore
: Silently ignore this operation if destination table already exists.
BigQueryBuilder
now tries to create its own BigQuery client if none is passed
0.4.0
New exciting features!
Several new features that make working with nested structure easier were added.
- Added
DataFrame.select_nested_columns
andDataFrame.with_nested_columns
, which make transformation of nested values much easier - Added
functions.transform
, useful to transform arrays - Added
transformations.normalize_arrays
which automatically sort all arrays in a DataFrame, including arrays of arrays of arrays... - Added
transformations.harmonize_dataframes
which takes two DataFrames and transform them into DataFrames with the same schema. - Experimental: Added data_diff capabilities, including a DataFrameComparator which can perform a diff between two DataFrames. Extremely useful for non-regression testing.
- Generated queries are now deterministic, this means that if you re-run the same DataFrame code twice, the exact same query will be sent to BigQuery twice, thus leveraging query caching.
Other features
- Added automatic retry when BigQuery returns an InternalServerError. We now do 3 tries by default.
- Added
functions.to_base32
andfunctions.to_base64
.from_base_32
andfrom_base_64
will be added later, once a bug in python-tabulate is fixed. - Added
Column.__mod__
(e.g.f.when(c % 2 == 0)
)
Breaking changes
- Improved typing of
Column.when.otherwise
. Nowfunctions.when
returns aWhenColumn
, a special type ofColumn
with two extra methods:when
andotherwise
. - Changed
functions.sort_array
's signature to make it consistent withtransform
0.3.4
Features
- added
Column[...]
(__getitem
) that can be used to access struct or array elements.
Bugfixes
- fixed various bugs in
transformations.analyze
- Was crashing on ARRAY<STRUCT<ARRAY<...>>>
- Was crashing on columns of type BYTES
- Columns used in group_by were analyzed, which is useless because the group is constant
0.3.3
Breaking changes
- The
bigquery_frame.transformations.analyze
now return one extra column namedcolumn_number
Features
- Add various Column methods:
asc
,desc
- Add various functions methods:
replace
,array
,
Bugfixes
Dataframe.sort
now works on aliased columnsColumn.alias
now works on sql keywordsfunctions.eqNullSafe
now never returns NULL- fix incorrect line numbering when query was displayed on error
0.3.2
Breaking changes
Column
constructor no longer acceptalias
as argument. UseColumn.alias()
instead.
Features
- Add various Column methods:
cast
,~
,isNull
,isNotNull
,eqNullSafe
- Add various functions methods:
concat
,length
,sort_array
,substring
Bugfixes
- Fix broken
Column.when().otherwise().alias()
0.3.1
Breaking changes
- Dropped support for Python 3.6
- Bumped dependencies versions
- DataFrame.toPandas() now requires extra permissions by default (the BigQuery ReadSession User role), but downloads data faster.
Features
- Added
functions.cast()
method - We now print the whole query in the error message when it fails
- Added
DataFrame.join()
. This is a first implementation which is a little clumsy.
Bugfixes
- Fix DataFrame deps being lost when using
df.alias()
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