bigtree 0.3.0

Tree Implementation for Python, integrated with Python list, dictionary, and pandas DataFrame.

Big Tree Python Package

Tree Implementation for Python, integrated with Python list, dictionary, and pandas DataFrame.

It is pythonic, making it easy to learn and extendable to many types of workflows.

Related Links:

• Documentation
• GitHub
• Changelog
• PyPI

Components

There are 2 segments to Big Tree consisting of Tree implementation and Directed Acyclic Graph (DAG) implementation.

For Tree implementation, there are 8 main components.

1. Node
   1. BaseNode, extendable class
   2. Node, BaseNode with node name attribute
2. Constructing Tree
   1. From list, containing paths
   2. From nested dictionary
   3. From nested recursive dictionary
   4. From pandas DataFrame
   5. Add nodes to existing tree using list
   6. Add nodes and attributes to existing tree using dictionary or pandas DataFrame, add using path
   7. Add only attributes to existing tree using dictionary or pandas DataFrame, add using name
3. Traversing Tree
   1. Pre-Order Traversal
   2. Post-Order Traversal
   3. Level-Order Traversal
   4. Level-Order-Group Traversal
4. Modifying Tree
   1. Shift nodes from location to destination
   2. Copy nodes from location to destination
   3. Copy nodes from one tree to another
5. Tree Search
   1. Find multiple nodes based on name, partial path, attribute value, user-defined condition
   2. Find single nodes based on name, path, attribute value, user-defined condition
   3. Find multiple child nodes based on attribute value, user-defined condition
   4. Find single child node based on name
6. Helper Function
   1. Cloning tree to another Node type
   2. Prune tree
   3. Get difference between two trees
7. Exporting Tree
   1. Print to console
   2. Export to pandas DataFrame, dictionary, or nested dictionary
   3. Export tree to dot (can save to .dot, .png, .jpeg files)
8. Workflows
   1. Sample workflows for tree demonstration!

For Directed Acyclic Graph (DAG) implementation, there are 4 main components.

1. Node
   1. DAGNode, extendable class for constructing Directed Acyclic Graph (DAG)
2. Constructing DAG
   1. From list, containing parent-child tuples
   2. From nested dictionary
   3. From pandas DataFrame
3. Traversing DAG
   1. Generic traversal method
4. Exporting DAG
   1. Export DAG to dot (can save to .dot, .png, .jpeg files)

Installation

To install bigtree, run the following line in command prompt:

pip install bigtree

If tree needs to be exported to image, it requires additional dependencies. Run the following lines in command prompt:

pip install bigtree[image]
brew install gprof2dot

Tree Demonstration

Here are some codes to getting started.

Construct Tree

Nodes can have attributes if they are initialized from Node, dictionary, or pandas DataFrame.

1. From Node

Nodes can be linked to each other with parent and children setter methods, or using bitshift operator with the convention parent_node >> child_node or child_node << parent_node.

from bigtree import Node, print_tree

root = Node("a", age=90)
b = Node("b", age=65)
c = Node("c", age=60)
d = Node("d", age=40)

root.children = [b, c]
d.parent = b

print_tree(root, attr_list=["age"])
# a [age=90]
# |-- b [age=65]
# |   `-- d [age=40]
# `-- c [age=60]

from bigtree import Node, print_tree

root = Node("a", age=90)
b = Node("b", age=65)
c = Node("c", age=60)
d = Node("d", age=40)

root >> b
root >> c
d << b

print_tree(root, attr_list=["age"])
# a [age=90]
# |-- b [age=65]
# |   `-- d [age=40]
# `-- c [age=60]

Alternatively, we can directly pass parent or children argument.

from bigtree import Node, print_tree

root = Node("a")
b = Node("b", parent=root)
c = Node("c", parent=root)

print_tree(root, style="ascii")
# a
# |-- b
# +-- c

from bigtree import Node, print_tree

b = Node("b")
c = Node("c")
root = Node("a", children=[b, c])

print_tree(root, style="ascii")
# a
# |-- b
# +-- c

2. From list

Construct nodes only, list contains full paths of nodes.

from bigtree import list_to_tree, print_tree

root = list_to_tree(["a/b/d", "a/c"])

print_tree(root)
# a
# |-- b
# |   `-- d
# `-- c

3. From nested dictionary

Construct nodes with attributes, key: path, value: dict of node attribute names and attribute values.

from bigtree import dict_to_tree, print_tree

path_dict = {
   "a": {"age": 90},
   "a/b": {"age": 65},
   "a/c": {"age": 60},
   "a/b/d": {"age": 40},
}
root = dict_to_tree(path_dict)

print_tree(root, attr_list=["age"])
# a [age=90]
# |-- b [age=65]
# |   `-- d [age=40]
# `-- c [age=60]

4. From nested recursive dictionary

Construct nodes with attributes, key: node attribute names, value: node attribute values, and list of children (recursive).

from bigtree import nested_dict_to_tree, print_tree

path_dict = {
   "name": "a",
   "age": 90,
   "children": [
      {
         "name": "b",
         "age": 65,
         "children": [
            {"name": "d", "age": 40},
         ],
      },
      {"name": "c", "age": 60},
   ],
}
root = nested_dict_to_tree(path_dict)

print_tree(root, attr_list=["age"])
# a [age=90]
# |-- b [age=65]
# |   `-- d [age=40]
# `-- c [age=60]

5. From pandas DataFrame

Construct nodes with attributes, pandas DataFrame contains path column and attribute columns.

import pandas as pd

from bigtree import dataframe_to_tree, print_tree

data = pd.DataFrame(
   [
      ["a", 90],
      ["a/b", 65],
      ["a/c", 60],
      ["a/b/d", 40],
   ],
   columns=["path", "age"],
)
root = dataframe_to_tree(data)

print_tree(root, attr_list=["age"])
# a [age=90]
# |-- b [age=65]
# |   `-- d [age=40]
# `-- c [age=60]

Print Tree

After tree is constructed, it can be viewed by printing to console using print_tree method.

from bigtree import Node, print_tree
root = Node("a", age=90)
b = Node("b", age=65, parent=root)
c = Node("c", age=60, parent=root)
d = Node("d", age=40, parent=b)
e = Node("e", age=35, parent=b)
print_tree(root)
# a
# |-- b
# |   |-- d
# |   `-- e
# `-- c

# Print sub-tree
print_tree(root, node_name="b")
# b
# |-- d
# `-- e

print_tree(root, max_depth=2)
# a
# |-- b
# `-- c

# Print attributes
print_tree(root, attr_list=["age"])
# a [age=90]
# |-- b [age=65]
# |   |-- d [age=40]
# |   `-- e [age=35]
# `-- c [age=60]

print_tree(root, attr_list=["age"], attr_bracket_open="*(", attr_bracket_close=")")
# a *(age=90)
# |-- b *(age=65)
# |   |-- d *(age=40)
# |   `-- e *(age=35)
# `-- c *(age=60)

# Available styles
print_tree(root, style="ansi")
# a
# |-- b
# |   |-- d
# |   `-- e
# `-- c

print_tree(root, style="ascii")
# a
# |-- b
# |   |-- d
# |   +-- e
# +-- c

print_tree(root, style="const")
# a
# ├── b
# │   ├── d
# │   └── e
# └── c

print_tree(root, style="const_bold")
# a
# ┣━━ b
# ┃   ┣━━ d
# ┃   ┗━━ e
# ┗━━ c

print_tree(root, style="rounded")
# a
# ├── b
# │   ├── d
# │   ╰── e
# ╰── c

print_tree(root, style="double")
# a
# ╠══ b
# ║   ╠══ d
# ║   ╚══ e
# ╚══ c

print_tree(
   root, style="custom",
   style_stem="|   ", style_branch="|-- ", style_stem_final="+-- "
)
# a
# |-- b
# |   |-- d
# |   +-- e
# +-- c

Modify Tree

Nodes can be shifted or copied from one path to another.

from bigtree import Node, shift_nodes, print_tree

root = Node("a")
b = Node("b", parent=root)
c = Node("c", parent=root)
d = Node("d", parent=root)
print_tree(root)
# a
# |-- b
# |-- c
# `-- d

shift_nodes(
   tree=root,
   from_paths=["a/c", "a/d"],
   to_paths=["a/b/c", "a/dummy/d"],
)
print_tree(root)
# a
# |-- b
# |   `-- c
# `-- dummy
#     `-- d

from bigtree import Node, copy_nodes, print_tree

root = Node("a")
b = Node("b", parent=root)
c = Node("c", parent=root)
d = Node("d", parent=root)
print_tree(root)
# a
# |-- b
# |-- c
# `-- d

copy_nodes(
   tree=root,
   from_paths=["a/c", "a/d"],
   to_paths=["a/b/c", "a/dummy/d"],
)
print_tree(root)
# a
# |-- b
# |   `-- c
# |-- c
# |-- d
# `-- dummy
#     `-- d

Nodes can also be copied between two different trees.

from bigtree import Node, copy_nodes_from_tree_to_tree, print_tree
root = Node("a")
b = Node("b", parent=root)
c = Node("c", parent=root)
d = Node("d", parent=root)
print_tree(root)
# a
# |-- b
# |-- c
# `-- d

root_other = Node("aa")
copy_nodes_from_tree_to_tree(
   from_tree=root,
   to_tree=root_other,
   from_paths=["a/b", "a/c", "a/d"],
   to_paths=["aa/b", "aa/b/c", "aa/dummy/d"],
)
print_tree(root_other)
# aa
# |-- b
# |   `-- c
# `-- dummy
#     `-- d

Tree Search

One or multiple nodes can be search based on name, path, attribute value, or user-defined condition.

To find a single node,

from bigtree import Node, print_tree, find, find_name, find_path, find_full_path, find_attr
root = Node("a", age=90)
b = Node("b", age=65, parent=root)
c = Node("c", age=60, parent=root)
d = Node("d", age=40, parent=c)
print_tree(root, attr_list=["age"])
# a [age=90]
# |-- b [age=65]
# `-- c [age=60]
#     `-- d [age=40]

find(root, lambda node: node.age == 60)
# Node(/a/c, age=60)

find_name(root, "d")
# Node(/a/c/d, age=40)

find_path(root, "/c/d")  # partial path
# Node(/a/c/d, age=40)

find_full_path(root, "a/c/d")  # full path
# Node(/a/c/d, age=40)

find_attr(root, "age", 40)
# Node(/a/c/d, age=40)

To find multiple nodes,

from bigtree import Node, print_tree, findall, find_names, find_paths, find_attrs
root = Node("a", age=90)
b = Node("b", age=65, parent=root)
c = Node("c", age=65, parent=root)
d = Node("c", age=40, parent=c)
print_tree(root, attr_list=["age"])
# a [age=90]
# |-- b [age=65]
# `-- c [age=65]
#     `-- c [age=40]

findall(root, lambda node: node.age == 65)
# (Node(/a/b, age=65), Node(/a/c, age=65))

find_names(root, "c")
# (Node(/a/c, age=65), Node(/a/c/c, age=40))

find_paths(root, "/c")  # partial path
# (Node(/a/c, age=65), Node(/a/c/c, age=40))

find_attrs(root, "age", 40)
# (Node(/a/c/c, age=40),)

Helper Utility

There following are helper functions for cloning tree to another Node type, pruning tree, and getting difference between two trees.

from bigtree import BaseNode, Node, print_tree, clone_tree, prune_tree, get_tree_diff

# Cloning tree from `BaseNode` to `Node` type
root = BaseNode(name="a")
b = BaseNode(name="b", parent=root)
clone_tree(root, Node)
# Node(/a, )

# Prune tree to only path a/b
root = Node("a")
b = Node("b", parent=root)
c = Node("c", parent=root)
print_tree(root)
# a
# |-- b
# `-- c

root_pruned = prune_tree(root, "a/b")
print_tree(root_pruned)
# a
# `-- b

# Get difference between two trees
root = Node("a")
b = Node("b", parent=root)
c = Node("c", parent=root)
print_tree(root)
# a
# |-- b
# `-- c

root_other = Node("a")
b_other = Node("b", parent=root_other)
print_tree(root_other)
# a
# `-- b

tree_diff = get_tree_diff(root, root_other)
print_tree(tree_diff)
# a
# `-- c (-)

Export Tree

Tree can be exported to another data type.

1. Export to nested dictionary
2. Export to nested recursive dictionary
3. Export to pandas DataFrame
4. Export to dot (and png)

from bigtree import Node, print_tree, tree_to_dict, tree_to_nested_dict, tree_to_dataframe, tree_to_dot

root = Node("a", age=90)
b = Node("b", age=65, parent=root)
c = Node("c", age=60, parent=root)
d = Node("d", age=40, parent=b)
e = Node("e", age=35, parent=b)
print_tree(root)
# a
# |-- b
# |   |-- d
# |   `-- e
# `-- c

tree_to_dict(
   root,
   name_key="name",
   parent_key="parent",
   attr_dict={"age": "person age"}
)
# {
#    '/a': {'name': 'a', 'parent': None, 'person age': 90},
#    '/a/b': {'name': 'b', 'parent': 'a', 'person age': 65},
#    '/a/b/d': {'name': 'd', 'parent': 'b', 'person age': 40},
#    '/a/b/e': {'name': 'e', 'parent': 'b', 'person age': 35},
#    '/a/c': {'name': 'c', 'parent': 'a', 'person age': 60}
# }

tree_to_nested_dict(root, all_attrs=True)
# {
#    'name': 'a',
#    'age': 90,
#    'children': [
#       {
#          'name': 'b',
#          'age': 65,
#          'children': [
#             {
#                'name': 'd',
#                'age': 40
#             },
#             {
#                'name': 'e',
#                'age': 35
#             }
#          ]
#       },
#       {
#          'name': 'c',
#          'age': 60
#       }
#    ]
# }

tree_to_dataframe(
   root,
   name_col="name",
   parent_col="parent",
   path_col="path",
   attr_dict={"age": "person age"}
)
#      path name parent  person age
# 0      /a    a   None          90
# 1    /a/b    b      a          65
# 2  /a/b/d    d      b          40
# 3  /a/b/e    e      b          35
# 4    /a/c    c      a          60

graph = tree_to_dot(root, node_colour="gold")
graph.write_png("demo.png")

DAG Demonstration

Compared to nodes in tree, nodes in DAG are able to have multiple parents.

Construct DAG

1. From DAGNode

DAGNode can be linked to each other with parents and children setter methods, or using bitshift operator with the convention parent_node >> child_node or child_node << parent_node.

from bigtree import DAGNode, dag_to_dot

a = DAGNode("a")
b = DAGNode("b")
c = DAGNode("c", parents=[a, b])
d = DAGNode("d", parents=[a, c])
e = DAGNode("e", parents=[d])
f = DAGNode("f", parents=[c, d])
h = DAGNode("h")
g = DAGNode("g", parents=[c], children=[h])

graph = dag_to_dot(a, node_colour="gold")
graph.write_png("assets/demo_dag.png")

2. From list

Construct nodes only, list contains parent-child tuples.

from bigtree import list_to_dag, dag_iterator

relations_list = [
   ("a", "c"),
   ("a", "d"),
   ("b", "c"),
   ("c", "d"),
   ("d", "e")
]
dag = list_to_dag(relations_list)
print([(parent.node_name, child.node_name) for parent, child in dag_iterator(dag)])
# [('a', 'd'), ('c', 'd'), ('d', 'e'), ('a', 'c'), ('b', 'c')]

3. From nested dictionary

Construct nodes with attributes, key: child name, value: dict of parent name, child node attributes.

from bigtree import dict_to_dag, dag_iterator

relation_dict = {
   "a": {"step": 1},
   "b": {"step": 1},
   "c": {"parent": ["a", "b"], "step": 2},
   "d": {"parent": ["a", "c"], "step": 2},
   "e": {"parent": ["d"], "step": 3},
}
dag = dict_to_dag(relation_dict, parent_key="parent")
print([(parent.node_name, child.node_name) for parent, child in dag_iterator(dag)])
# [('a', 'd'), ('c', 'd'), ('d', 'e'), ('a', 'c'), ('b', 'c')]

4. From pandas DataFrame

Construct nodes with attributes, pandas DataFrame contains child column, parent column, and attribute columns.

import pandas as pd
from bigtree import dataframe_to_dag, dag_iterator

path_data = pd.DataFrame([
   ["a", None, 1],
   ["b", None, 1],
   ["c", "a", 2],
   ["c", "b", 2],
   ["d", "a", 2],
   ["d", "c", 2],
   ["e", "d", 3],
],
   columns=["child", "parent", "step"]
)
dag = dataframe_to_dag(path_data)
print([(parent.node_name, child.node_name) for parent, child in dag_iterator(dag)])
# [('a', 'd'), ('c', 'd'), ('d', 'e'), ('a', 'c'), ('b', 'c')]

Demo Usage

To Do Application

There is existing implementation of a To-Do app to showcase how bigtree can be used. There are functions to:

• Add or remove list to To-Do application
• Add or remove item to list, default list is the 'General' list
• Prioritize a list/item by reordering them as first list/item
• Save and import To-Do application to and from an external JSON file
• Show To-Do application, which prints tree to console

from bigtree import AppToDo
app = AppToDo("To Do App")
app.add_item(item_name="Homework 1", list_name="School")
app.add_item(item_name=["Milk", "Bread"], list_name="Groceries", description="Urgent")
app.add_item(item_name="Cook")
app.show(style="const")
# To Do App
# ├── School
# │   └── Homework 1
# ├── Groceries
# │   ├── Milk [description=Urgent]
# │   └── Bread [description=Urgent]
# └── General
#   └── Cook