bijux-proteomics-core 0.3.5

Protein program domain models, lifecycle gates, and execution interfaces for stage-based discovery workflows

bijux-proteomics-core

bijux-proteomics-core defines the central protein program domain, including entities, lifecycle transitions, review gates, assay requirements, and execution interfaces used across the platform.

Use this package when you need stage-based governance for protein programs, deterministic progression rules, and enforceable domain contracts for decision and execution pipelines.

Why teams pick this package

• explicit protein program contracts with validated lifecycle progression rules
• deterministic gate transitions that prevent invalid stage advancement
• strongly typed models for targets, assays, reviews, and governance outcomes
• stable interfaces for orchestration and repository integration

Typical use cases

• model a protein program from inception through review-gated progression
• enforce invariant checks before promotion, approval, or execution
• build service layers on top of shared program and repository contracts
• integrate CLI-driven domain workflows in local or CI automation

Installation

pip install bijux-proteomics-core

Quick start

bijux-proteomics --help

Import-driven usage starts from the core domain package:

from bijux_proteomics import program_spec, validation

Package boundaries

This package owns lifecycle domain models, progression rules, and validation invariants.

It does not own evidence trust policy, ranking policy, or lab scheduling behavior.

Source guide

• src/bijux_proteomics/program_spec.py for core program entities and progression contracts
• src/bijux_proteomics/repositories.py for decision and gate repository protocols
• src/bijux_proteomics/validation.py for invariant checks
• src/bijux_proteomics/interfaces for CLI boundaries
• tests for executable behavior expectations

Documentation

• Package guide
• Ownership boundary
• Architecture overview
• Interface contracts
• Release and versioning