Biobanking data processing, annotation, and association workflows
Project description
Biobanking
Systematic collection, processing, storage, and analysis of biological samples and associated health data for medical research.
Supported pipelines
Preprocess
QC (Quality Control)
Annotation
Association
Summary
Supported biobanks
All of Us
UK Biobank
Internal Use
python -m pip install -U pip build
pip install twine
# linux
rm -rf dist build *.egg-info src/*.egg-info
# windows
Remove-Item -Recurse -Force dist, *.egg-info, src\*.egg-info
python -m build
pip install dist/biobanking-0.0.6-py3-none-any.whl
python -c "from biobanking.association.aou import REGENIE; regenie = REGENIE(); from biobanking.preprocess.aou.measurements import save_measurements_in_wide_format; print('import ok')"
twine upload dist/*
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