biobb_disgenet

Introduction

Biobb_template is a complete code template to promote and facilitate the creation of new Biobbs by the community. Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site: latest API documentation.

Version

v3.0.0 2021.3

Installation

If you have no experience with anaconda, please first take a look to the New with anaconda? section of the official documentation.

Download repository

Although the biobb_template repository is available at GitHub and thus you can clone it, we strongly recommend you to [download it compressed]and start your new project from scratch.

Activate the env

Since the Bioconda package is not ready, after the download of the directory is necessary to set up the conda environment for the right functioning:

conda create conda_env/environment.yml
conda activate biobb_disgenet

If the package is not working, set it up manually:

python setup.py build
python setup.py install

Binary paths configuration

Additionally, it's recommendable to configure binary paths in your environment in order to ease the command line execution. More info about this subject in the Binary path configuration section of the official documentation.

Documentation

Click here to find the API Documentation example for this template and here for Command Line documentation.

And here you can find the full documentation about how to build a new BioExcel building block from scratch.

Copyright & Licensing

This software has been developed in the MMB group at the BSC & IRB for the European BioExcel, funded by the European Commission (EU H2020 823830, EU H2020 675728).

• (c) 2015-2020 Barcelona Supercomputing Center
• (c) 2015-2020 Institute for Research in Biomedicine

Licensed under the Apache License 2.0, see the file LICENSE for details.