biobb-mem 5.1.1

Biobb_mem is a complete code template to promote and facilitate the creation of new Biobbs by the community.

biobb_mem

Introduction

biobb_mem is a BioBB category for membrane analysis and manipulation. biobb_mem allows analysis of membrane properties and manipulation of membrane systems using tools like MDAnalysis, FATSLiM and LiPyphilic. Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site: latest API documentation.

Version

v5.1.1 2025.1

Installation

Using PIP:

Important: PIP only installs the package. All the dependencies must be installed separately. To perform a complete installation, please use ANACONDA or DOCKER.

• Installation:

    pip install "biobb_mem>=5.1.1"
  

• Usage: Python API documentation

Using ANACONDA:

• Installation:

    conda install -c bioconda "biobb_mem>=5.1.1"
  

• Usage: With conda installation BioBBs can be used with the Python API documentation and the Command Line documentation

Using DOCKER:

• Installation:

    docker pull quay.io/biocontainers/biobb_mem:5.1.1--pyhdfd78af_0
  

• Usage:

    docker run quay.io/biocontainers/biobb_mem:5.1.1--pyhdfd78af_0
  

Using SINGULARITY:

MacOS users: it's strongly recommended to avoid Singularity and use Docker as containerization system.

• Installation:

    singularity pull --name biobb_mem.sif https://depot.galaxyproject.org/singularity/biobb_mem:5.1.1--pyhdfd78af_0
  

• Usage:

    singularity exec biobb_mem.sif <command>
  

The command list and specification can be found at the Command Line documentation.

Copyright & Licensing

This software has been developed in the MMB group at the BSC & IRB for the European BioExcel, funded by the European Commission (EU Horizon Europe 101093290, EU H2020 823830, EU H2020 675728).

• (c) 2015-2025 Barcelona Supercomputing Center
• (c) 2015-2025 Institute for Research in Biomedicine

Licensed under the Apache License 2.0, see the file LICENSE for details.