biobb_pmx

Introduction

Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions. Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site: latest API documentation.

Version

v5.3.0 2026.1

Installation

Using PIP:

Important: PIP only installs the package. All the dependencies must be installed separately. To perform a complete installation, please use ANACONDA or DOCKER.

Installation:
```
  pip install "biobb_pmx>=5.3.0"
```
Usage: Python API documentation

Using ANACONDA:

Installation:

  conda install -c bioconda "biobb_pmx>=5.3.0"

Usage: With conda installation BioBBs can be used with the Python API documentation and the Command Line documentation

Using DOCKER:

Installation:

  docker pull quay.io/biocontainers/biobb_pmx:5.3.0--pyhdfd78af_0

Usage:

  docker run quay.io/biocontainers/biobb_pmx:5.3.0--pyhdfd78af_0 <command>

Using SINGULARITY:

MacOS users: it's strongly recommended to avoid Singularity and use Docker as containerization system.

Installation:

  singularity pull --name biobb_pmx.sif https://depot.galaxyproject.org/singularity/biobb_pmx:5.3.0--pyhdfd78af_0

Usage:

  singularity exec biobb_pmx.sif <command>

The command list and specification can be found at the Command Line documentation.

Copyright & Licensing

This software has been developed in the MMB group at the BSC & IRB for the European BioExcel, funded by the European Commission (EU Horizon Europe 101093290, EU H2020 823830, EU H2020 675728).

Licensed under the Apache License 2.0, see the file LICENSE for details.

Metadata

Release files for biobb-pmx 5.3.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for biobb-pmx 5.3.0
File	Size	Uploaded
biobb_pmx-5.3.0.tar.gz	22.2 kB	Jul 23, 2026	Details

Built distribution (wheel)

Table of built distributions (wheels) for biobb-pmx 5.3.0
File	Interpreter	ABI	Platform	Reset
biobb_pmx-5.3.0-py3-none-any.whl 31.3 kB Jul 23, 2026	Python 3	none	any	Details

Total release size: 53.6 kB

Release files / biobb_pmx-5.3.0.tar.gz

Download URL	biobb_pmx-5.3.0.tar.gz
Size	22.2 kB
Tags	Source
SHA-256 checksum How to use checksums	`3d37d584c0352975ea2d4b33be1a02eadd4344c9c281c0a54dacc3a6ced3cd74`
BLAKE2b-256 checksum How to use checksums	`9cd18ba665e31839b9307391ec7bf9c45c0f8985e7570ab15c9acc947ebd85db`
Upload date	Jul 23, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/4.0.2 CPython/3.8.18`

Release files / biobb_pmx-5.3.0-py3-none-any.whl

Download URL	biobb_pmx-5.3.0-py3-none-any.whl
Size	31.3 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`b91a6410eddba581abdd86b7d9253b20f37ab7bfb3868663147aa553b8e30e4e`
BLAKE2b-256 checksum How to use checksums	`d3592beefce4f23e6aa2b7995787a4acfa4bdba0486eea18c99d684448e110d9`
Upload date	Jul 23, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/4.0.2 CPython/3.8.18`