A library for biological computing works
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Project description
Biobrary
Introduction
Biobrary is a python library, which contain data and methods for biological computation.
Requirement
- ete3
Install
- using pip
pip install biobrary --user
- manally install
git clone https://github.com/benjaminfang/biobrary.git
cd biobrary
mv biobrary $PYTHONPATH
where PYTHONPATH is python library searching path.
Usage
import biobrary
dir(biobrary)
Data and Method
-
bioparse
-
FASTA
class for fasta file.
-
GTF
class for gtf file.
-
-
tree
-
CircleNode
class for phylogenic tree traverse and operations. And divide tree to circle node according to phylogenic distance.
-
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