biocroissant 0.1.0

Metadata format and tooling for biomedical and health ML datasets (BioCroissant).

BioCroissant

BioCroissant is a metadata format and tooling for biomedical and health ML datasets, extending Croissant.

This repository is the project skeleton for community feedback. Implementation (parser, converters, validation) will be added in a later phase, including a possible port from the biocroissant-to-omop prototype.

Contents

• docs/specification/ – BioCroissant specification (potentially)
• examples/ – Example metadata and data (planned)
• schema/ – JSON-LD context, JSON Schema, value domains (potentially) — alternative: schema profile(s)
• src/biocroissant/ – Python package (skeleton)
• CONTRIBUTING.md – How to contribute