With biofkit, sequence can be easily extract from pdb. And more functions will be added.
Project description
biofkit
Biofkit is now containing only one module with one package which can transfer pdb into fasta (or a sequence dictionary) very easily.
How to Install
Conda
conda install -c chou_uken biofkit
Mamba
mamba install -c chou_uken biofkit
Pip
pip install biofkit
How to Use
ProteinKit
from biofkit.proteinKit import pdbKit
# if argument fasta is True, a fasta file will be created in the same path as the pdb file.
pdbKit.pdb2Seq(pdbFilePath: str, fasta: bool = False) -> dict[str, str]
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