bioimage-py

Efficient, parallel, and distributed implementation of image analysis and segmentation functionality for biomedical imaging.

Note: this package is in an early state and mainly provides support for data conversion, downsampling, and some initial segmentation functionality (connected components and watershed). The functionality will be extended soon; the implementation of seamlessly switching between local and distributed execution (via slurm) is already in place. Any feedback on issues you find or on how to improve usability is welcome!

This package can be installed via pip:

pip install bioimage-py

and conda:

conda install -c conda-forge bioimage-py

See the documentation for more detailed installation instructions and usage examples.

Metadata

Release files for bioimage-py 0.2.2

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Source distribution (sdist)

Source distribution for bioimage-py 0.2.2
File	Size	Uploaded
bioimage_py-0.2.2.tar.gz	170.3 kB	Oct 15, 2026	Details

Built distribution (wheel)

Table of built distributions (wheels) for bioimage-py 0.2.2
File	Interpreter	ABI	Platform	Reset
bioimage_py-0.2.2-py3-none-any.whl 168.1 kB Oct 15, 2026	Python 3	none	any	Details

Total release size: 338.3 kB

Release files / bioimage_py-0.2.2.tar.gz

Download URL	bioimage_py-0.2.2.tar.gz
Size	170.3 kB
Tags	Source
SHA-256 checksum How to use checksums	`e25853cf8d36129d09f038a4bcbc2a11983db36dea5dbe8dac92d54608cac69e`
BLAKE2b-256 checksum How to use checksums	`17f517c41174c1b3753b19ee1c552039ca30fdd64d065cbe347628c939f6656f`
Upload date	Oct 15, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	Yes
Uploaded via	`twine/7.0.0 CPython/3.13.14`

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Publishing platform: GitHub Actions
Publishing repository: github.com/computational-cell-analytics/bioimage-py
Publishing commit: github.com/computational-cell-analytics/bioimage-py/tree/093f457f529118bbdfd62227811c8ef8bd5e2018

Workflow

Publishing configuration: github.com/computational-cell-analytics/bioimage-py/blob/093f457f529118bbdfd62227811c8ef8bd5e2018/.github/workflows/publish.yml
Publishing logs: github.com/computational-cell-analytics/bioimage-py/actions/runs/38802811527/attempts/1

Artifact

Subject: bioimage_py-0.2.2.tar.gz
SHA-256 checksum: e25853cf8d36129d09f038a4bcbc2a11983db36dea5dbe8dac92d54608cac69e Verifying attestations

Release files / bioimage_py-0.2.2-py3-none-any.whl

Download URL	bioimage_py-0.2.2-py3-none-any.whl
Size	168.1 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`c9aee39ec35e73425ed989f8468523e293b4e9a01fe2abf7ef1fbc12984c7a71`
BLAKE2b-256 checksum How to use checksums	`0a24a558890a0a32b4d333bcb3b17f7542fe92193c4935f2b009d5f3d302bfdb`
Upload date	Oct 15, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	Yes
Uploaded via	`twine/7.0.0 CPython/3.13.14`

Provenance

Identity

Publishing platform: GitHub Actions
Publishing repository: github.com/computational-cell-analytics/bioimage-py
Publishing commit: github.com/computational-cell-analytics/bioimage-py/tree/093f457f529118bbdfd62227811c8ef8bd5e2018

Workflow

Publishing configuration: github.com/computational-cell-analytics/bioimage-py/blob/093f457f529118bbdfd62227811c8ef8bd5e2018/.github/workflows/publish.yml
Publishing logs: github.com/computational-cell-analytics/bioimage-py/actions/runs/38802811527/attempts/1

Artifact

Subject: bioimage_py-0.2.2-py3-none-any.whl
SHA-256 checksum: c9aee39ec35e73425ed989f8468523e293b4e9a01fe2abf7ef1fbc12984c7a71 Verifying attestations