bioimage
Library for convenient handling of bioimages
Contains the following modules:
io
Convenient file management, uses pims and pycomfort under the hood. For example:
- load_bio_image(from_file: Path) that allows loading microscopy images
- load_frame(from_file: Path): that loads first frame of the microscopy image from the system path
filters
Useful filters to process images. For example:
- rolling ball filter to fix some issues on the background
- local_contrast filter that can be used together with thresholding to find boundaries of the objects
- gray2color that deals with fluorescent images
- glowing - for dealing with comparisons between normal and fluorescent images
comparisons
When you need to compare multiple conditions For example:
- show_images that displays images from the whole folder as a grid plot
- folder_to_conditions that allows splitting images in the folder to multiple conditions based on their namings
- get_glowing_overlays that allows combining fluorescent and phase-contrast images
1 maintainer
Metadata
1 maintainer
Release files for bioimage 0.1.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| bioimage-0.1.3.tar.gz | 8.5 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| bioimage-0.1.3-py2.py3-none-any.whl | Python 3, Python 2 | none | any | Details |
Total release size: 17.5 kB
Release files / bioimage-0.1.3.tar.gz
| Download URL | bioimage-0.1.3.tar.gz |
|---|---|
| Size | 8.5 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
2d5e616ff4cba5dd81ca76e25af297a64388a40e3a71887ccb0ae3050a40be1a
|
|
BLAKE2b-256 checksum How to use checksums |
8ffb8b17e59ec18565eab4f2f0217deb30623614f389b3bd70b8e89d95591a6a
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/0.0.0 importlib_metadata/4.10.1 pkginfo/1.8.2 requests/2.27.1 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.7
|
Release files / bioimage-0.1.3-py2.py3-none-any.whl
| Download URL | bioimage-0.1.3-py2.py3-none-any.whl |
|---|---|
| Size | 9.0 kB |
| Tags | Python 2 Python 3 |
|
SHA-256 checksum How to use checksums |
63902ea6013382db25a05966e3351aeb94d05e94b827c6e7f8d9f2003b34f28a
|
|
BLAKE2b-256 checksum How to use checksums |
8f0099bf6d48e50f071a7b0f49a46550e369fd1b524d508cfeecd82c0a54de7a
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/0.0.0 importlib_metadata/4.10.1 pkginfo/1.8.2 requests/2.27.1 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.7
|
Security for bioimage 0.1.3
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
