bioinformatics-mcp-server
MCP-Server für Bioinformatik- und Life-Science-Daten. Gibt AI-Agents Zugriff auf NCBI Gene, UniProt, PubMed und ClinVar — komplett kostenlos ohne API-Key.
Tools
| Tool | Beschreibung |
|---|---|
search_genes |
Gen-Suche in NCBI Gene Database (Symbol, Name, Funktion) |
get_gene_details |
Detailinfos zu einem Gen via NCBI Gene ID |
search_clinvar_variants |
Klinische Varianten/Mutationen via NCBI ClinVar |
get_taxonomy |
Taxonomische Klassifikation via NCBI Taxonomy |
search_proteins |
Protein-Suche in UniProt |
get_protein_details |
Protein-Details via UniProt Accession |
get_ncbi_sequence |
DNA/Protein-Sequenzen aus NCBI (FASTA/GenBank) |
search_pubmed |
Literatur-Suche in PubMed |
get_pubmed_abstract |
Vollständiger Abstract eines PubMed-Artikels |
get_pubmed_citations |
Artikel die eine Publikation zitieren |
Installation
pip install bioinformatics-mcp-server
Konfiguration (Claude Desktop)
{
"mcpServers": {
"bioinformatics": {
"command": "bioinformatics-server"
}
}
}
Beispiele
# Gen-Suche
search_genes("BRCA1", organism="human")
search_genes("p53", organism="mouse")
# Klinische Varianten
search_clinvar_variants("CFTR", significance="pathogenic")
# Protein-Lookup
search_proteins("insulin receptor", organism="human")
get_protein_details("P06213")
# DNA-Sequenz abrufen
get_ncbi_sequence("NM_007294", database="nucleotide")
# Literatur
search_pubmed("CRISPR gene therapy cancer 2025", max_results=5)
get_pubmed_abstract("33461210")
APIs
- NCBI E-utilities — Gene, ClinVar, Taxonomy, PubMed, Sequenzen (kostenlos, 3 req/s)
- UniProt REST API — Proteine, Sequenzen, Funktionen (kostenlos, unbegrenzt)
Kein API-Key erforderlich.
Lizenz
MIT
1 maintainer
Release files for bioinformatics-mcp-server 0.1.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| bioinformatics_mcp_server-0.1.0.tar.gz | 8.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| bioinformatics_mcp_server-0.1.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 20.5 kB
Release files / bioinformatics_mcp_server-0.1.0.tar.gz
| Download URL | bioinformatics_mcp_server-0.1.0.tar.gz |
|---|---|
| Size | 8.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
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Release files / bioinformatics_mcp_server-0.1.0-py3-none-any.whl
| Download URL | bioinformatics_mcp_server-0.1.0-py3-none-any.whl |
|---|---|
| Size | 11.7 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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| Uploaded via |
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