MCP server for Biolink Model Toolkit

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  • License: MIT License (MIT)
  • Author: Chris Bizon
  • Tags biolink , biomedical , knowledge-graph , mcp , translator
  • Requires: Python >=3.10
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Project description

Biolink MCP

MCP server for the Biolink Model Toolkit - query and navigate the Biolink Model.

Documentation

For full documentation, installation instructions, and usage examples, see the main RoboMCP repository.

Quick Start

# Run with uvx (no installation needed)
uvx biolink-mcp

Tools

  • get_element - Get a Biolink Model element by name
  • get_ancestors - Get ancestors of a Biolink element
  • get_descendants - Get descendants of a Biolink element
  • get_all_classes - Get all Biolink classes
  • get_all_slots - Get all Biolink slots
  • get_all_entities - Get all Biolink entities
  • get_element_by_mapping - Map external CURIEs to Biolink elements
  • is_predicate - Check if a name is a Biolink predicate
  • get_slot_domain - Get the domain for a Biolink slot
  • get_slot_range - Get the range for a Biolink slot

License

MIT License - see the main repository for details.

Project details

Verified details

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Project links
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  • License: MIT License (MIT)
  • Author: Chris Bizon
  • Tags biolink , biomedical , knowledge-graph , mcp , translator
  • Requires: Python >=3.10
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0.1.0

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