biomero-converter
Conversion from various formats to Ome-tiff and Ome-zarr
This tool can be used as biomero plugin, Docker container or stand-alone
Features
- Extract and process image data including bioformats unsupported formats
- OME-Zarr
- (OME-) Tiff
- Thermo Fisher tiff files
- ImageXpress Pico
- Molecular Devices
- CellReporterXpress experiment
- image db files (.db)
- isyntax files (.isyntax)
- Incucyte archives (.icharch)
- 3DHistech files (.mrxs)
- DICOM files
- Leica files (.lif, .lof, .xlef, .xlcf, .xlif)
- all images in a file, or a single image selected by UUID
- RGB, multi-channel, Z-stack, time series and tile scans (stitched)
- Export to Ome formats
- OME-Tiff
- OME-Zarr
- Supporting
- (Large) whole slide images
- Screen Plate Well / High Content Screening format
- Compatible with Omero
Documentation
nl-bioimaging.github.io/biomero-converter
Generated: deepwiki.com/NL-BioImaging/biomero-converter
1 maintainer
Metadata
1 maintainer
Release files for biomero-converter 0.2.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| biomero_converter-0.2.1.tar.gz | 398.0 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| biomero_converter-0.2.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 481.4 kB
Release files / biomero_converter-0.2.1.tar.gz
| Download URL | biomero_converter-0.2.1.tar.gz |
|---|---|
| Size | 398.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Yes |
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twine/7.0.0 CPython/3.13.14
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Transparency logRelease files / biomero_converter-0.2.1-py3-none-any.whl
| Download URL | biomero_converter-0.2.1-py3-none-any.whl |
|---|---|
| Size | 83.4 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
1e947fa79700bad046e4ae08dd3bebd2aa9d665152799ff91f355f74981a3aeb
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BLAKE2b-256 checksum How to use checksums |
add950f5f4bfba69e7dfaee385e479d64e8d93e733ae9a180b6c8db7712b6ecf
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 14, 2026.
Transparency log
