Python-side access to PPI data from Gygi lab
Project description
BioPlexPy
Python-side access to PPI data from Gygi lab
Citation
If you use the BioPlexPy package in published research, please cite:
Ludwig Geistlinger, Roger Vargas Jr, Tyrone Lee, Joshua Pan, Edward Huttlin, Robert Gentleman (2023) BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions. Bioinformatics. doi: 10.1093/bioinformatics/btad091.
Installation
The package can be installed through pypi or through github
pip install bioplexpy
or
pip install git+https://github.com/ccb-hms/BioPlexPy.git#egg=BioPlexPy
Usage
See the BioPlex examples notebook for basic usage and how to obtain BioPlex datasets.
https://bioplexpy.readthedocs.io/en/latest/
Running Tests
python -m doctest BioPlexPy/to run the respective test for the file Warning: By default, doctests will not print anything if tests are successful. Add the-voption to print verbose output.
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