BioPlexPy
Python-side access to PPI data from Gygi lab
Citation
If you use the BioPlexPy package in published research, please cite:
Ludwig Geistlinger, Roger Vargas Jr, Tyrone Lee, Joshua Pan, Edward Huttlin, Robert Gentleman (2023) BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions. Bioinformatics. doi: 10.1093/bioinformatics/btad091.
Installation
The package can be installed through pypi or through github
pip install bioplexpy
or
pip install git+https://github.com/ccb-hms/BioPlexPy.git#egg=BioPlexPy
Usage
See the BioPlex examples notebook for basic usage and how to obtain BioPlex datasets.
https://bioplexpy.readthedocs.io/en/latest/
Running Tests
python -m doctest BioPlexPy/to run the respective test for the file Warning: By default, doctests will not print anything if tests are successful. Add the-voption to print verbose output.
2 maintainers
Metadata
2 maintainers
Release files for bioplexpy 1.1.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| bioplexpy-1.1.0.tar.gz | 18.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| bioplexpy-1.1.0-py2.py3-none-any.whl | Python 3, Python 2 | none | any | Details |
Total release size: 39.0 kB
Release files / bioplexpy-1.1.0.tar.gz
| Download URL | bioplexpy-1.1.0.tar.gz |
|---|---|
| Size | 18.7 kB |
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Release files / bioplexpy-1.1.0-py2.py3-none-any.whl
| Download URL | bioplexpy-1.1.0-py2.py3-none-any.whl |
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| Size | 20.3 kB |
| Tags | Python 2 Python 3 |
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