biorunner 0.1.0

BioRunner CLI - A command-line interface for BioGarden BioHub

BioRunner CLI

A command-line interface for BioGarden BioHub.

Installation

Using pipx (recommended)

pipx install biorunner

Using pip

pip install --user biorunner

Usage

Initialize Configuration

biorunner init --api https://api.example.com --token your-api-key

Or use environment variables:

export BIORUNNER_APIBASE=https://api.example.com
export BIORUNNER_APIKEY=your-api-key
biorunner init

Configuration is saved to $XDG_CONFIG_HOME/biorunner/config.json (or ~/.config/biorunner/config.json) with 0600 permissions.

Development

# Install in development mode
pip install -e .

# Run tests
pytest

# Format code
black biorunner/

# Lint code
ruff check biorunner/