BioRunner CLI
A command-line interface for BioGarden BioHub.
Installation
Using pipx (recommended)
pipx install biorunner
Using pip
pip install --user biorunner
Usage
Initialize Configuration
biorunner init --api https://api.example.com --token your-api-key
Or use environment variables:
export BIORUNNER_APIBASE=https://api.example.com
export BIORUNNER_APIKEY=your-api-key
biorunner init
Configuration is saved to $XDG_CONFIG_HOME/biorunner/config.json (or ~/.config/biorunner/config.json) with 0600 permissions.
Development
# Install in development mode
pip install -e .
# Run tests
pytest
# Format code
black biorunner/
# Lint code
ruff check biorunner/
1 maintainer
Metadata
1 maintainer
Release files for biorunner 0.1.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| biorunner-0.1.0.tar.gz | 5.8 kB | Without provenance | Details for biorunner-0.1.0.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| biorunner-0.1.0-py3-none-any.whl | Python 3 | none | any | Details for biorunner-0.1.0-py3-none-any.whl |
Total release size: 9.6 kB
Release files / biorunner-0.1.0.tar.gz
| Download URL | biorunner-0.1.0.tar.gz |
|---|---|
| Size | 5.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
7d6bf6f2dca5ef23a3d33c5d6334f3221972faf99b53689cd345a0451ad6bf74
|
|
BLAKE2b-256 checksum How to use checksums |
591ad4a1f5c734a7f1684885065dd175d877d81cec6210e948ae8dcee42abbd2
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.10.17
|
Release files / biorunner-0.1.0-py3-none-any.whl
| Download URL | biorunner-0.1.0-py3-none-any.whl |
|---|---|
| Size | 3.9 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
6782953fb726533271250ffe97299b7b8e127f0d4e74c0f1a6303901cb991394
|
|
BLAKE2b-256 checksum How to use checksums |
d1bded56c3eeca1f5a81c27bc6b36bae129d7bbd70d9a0a577c91ab274ff28ec
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.10.17
|
Security for biorunner 0.1.0
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
