bioshell 0.1.0

A CLI tool to generate Biopython lab exercise scripts with theory

Bioshell

A command-line tool to generate Biopython scripts for lab exercises, created by jfc.

Installation

pip install bioshell

Usage

Run the following command to open the menu:

bioshell

Choose a program index from the menu. The tool will:

1. Create a Python file in your current directory.
2. Include the theory in the comments of that file.
3. Provide instructions on how to run it.

Programs Included:

1. Basic Sequence Operations
2. Read Sequence Data from FASTA
3. Write Sequence Data to GenBank
4. Convert FASTA to GenBank
5. SeqRecord Annotations and Features
6. Fetch Data from NCBI (Entrez)
7. Pairwise Sequence Alignment
8. Multiple Sequence Alignment (MUSCLE)
9. Constructing Phylogenetic Trees
10. Protein Structure Visualization (PDB)

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Developed by jfc ([e-mail])