BioSimulations-ModelDB
BioSimulations-ModelDB provides a command-line application for publishing the ModelDB model repository of neural models to the BioSimulations repository for simulation projects.
This command-line program is run weekly by the GitHub action in this repository.
Installation
Requirements
Python >= 3.7
pip
XPP
Install latest revision from GitHub
git clone --recurse-submodules https://github.com/biosimulations/biosimulations-modeldb pip install biosimulations-modeldb/
API documentation
API documentation is available here.
License
This package is released under the MIT license.
Development team
This package was developed by the Karr Lab at the Icahn School of Medicine at Mount Sinai in New York and the Center for Reproducible Biomedical Modeling. ModelDB was developed by the Sense Lab at Yale University with assistance from the contributors listed here.
Contributing to BioSimulations-ModelDB
We enthusiastically welcome contributions to BioSimulations-ModelDB! Please see the guide to contributing and the developer’s code of conduct.
Acknowledgements
This work was supported by National Institutes of Health award P41EB023912.
Questions and comments
Please contact the BioSimulations Team with any questions or comments about this package. Please contact the ModelDB Team with any questions or comments about ModelDB.
3 maintainers
Metadata
3 maintainers
Release files for biosimulations-modeldb 0.0.4
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| biosimulations-modeldb-0.0.4.tar.gz | 27.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| biosimulations_modeldb-0.0.4-py2.py3-none-any.whl | Python 2, Python 3 | none | any | Details |
Total release size: 55.4 kB
Release files / biosimulations-modeldb-0.0.4.tar.gz
| Download URL | biosimulations-modeldb-0.0.4.tar.gz |
|---|---|
| Size | 27.1 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.8.0 pkginfo/1.8.2 readme-renderer/32.0 requests/2.27.1 requests-toolbelt/0.9.1 urllib3/1.26.8 tqdm/4.63.0 importlib-metadata/4.11.1 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.4 CPython/3.9.10
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Release files / biosimulations_modeldb-0.0.4-py2.py3-none-any.whl
| Download URL | biosimulations_modeldb-0.0.4-py2.py3-none-any.whl |
|---|---|
| Size | 28.3 kB |
| Tags | Python 2 Python 3 |
|
SHA-256 checksum How to use checksums |
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|
BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.8.0 pkginfo/1.8.2 readme-renderer/32.0 requests/2.27.1 requests-toolbelt/0.9.1 urllib3/1.26.8 tqdm/4.63.0 importlib-metadata/4.11.1 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.4 CPython/3.9.10
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