A toolbox for biosignal processing written in Python.
The toolbox bundles together various signal processing and pattern recognition methods geared towards the analysis of biosignals.
Highlights:
Support for various biosignals: BVP, ECG, EDA, EEG, EMG, Respiration
Signal analysis primitives: filtering, frequency analysis
Clustering
Biometrics
Documentation can be found at: http://biosppy.readthedocs.org/
Installation
Installation can be easily done with pip:
$ pip install biosppySimple Example
The code below loads an ECG signal from the examples folder, filters it, performs R-peak detection, and computes the instantaneous heart rate.
import numpy as np
from biosppy.signals import ecg
# load raw ECG signal
signal = np.loadtxt('./examples/ecg.txt')
# process it and plot
out = ecg.ecg(signal=signal, sampling_rate=1000., show=True)Dependencies
bidict
h5py
matplotlib
numpy
scikit-learn
scipy
shortuuid
six
Citing
Please use the following if you need to cite BioSPPy:
Carreiras C, Alves AP, Lourenço A, Canento F, Silva H, Fred A, et al. BioSPPy - Biosignal Processing in Python, 2015-, https://github.com/PIA-Group/BioSPPy/ [Online; accessed <year>-<month>-<day>].
@Misc{,
author = {Carlos Carreiras and Ana Priscila Alves and Andr\'{e} Louren\c{c}o and Filipe Canento and Hugo Silva and Ana Fred and others},
title = {{BioSPPy}: Biosignal Processing in {Python}},
year = {2015--},
url = "https://github.com/PIA-Group/BioSPPy/",
note = {[Online; accessed <today>]}
}License
BioSPPy is released under the BSD 3-clause license. See LICENSE for more details.
Disclaimer
This program is distributed in the hope it will be useful and provided to you “as is”, but WITHOUT ANY WARRANTY, without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program is NOT intended for medical diagnosis. We expressly disclaim any liability whatsoever for any direct, indirect, consequential, incidental or special damages, including, without limitation, lost revenues, lost profits, losses resulting from business interruption or loss of data, regardless of the form of action or legal theory under which the liability may be asserted, even if advised of the possibility of such damages.
3 maintainers
Release files for biosppy 0.5.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| biosppy-0.5.1.tar.gz | 67.2 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| biosppy-0.5.1-py2.py3-none-any.whl | Python 2, Python 3 | none | any | Details |
Total release size: 144.6 kB
Release files / biosppy-0.5.1.tar.gz
| Download URL | biosppy-0.5.1.tar.gz |
|---|---|
| Size | 67.2 kB |
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Release files / biosppy-0.5.1-py2.py3-none-any.whl
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| Size | 77.4 kB |
| Tags | Python 2 Python 3 |
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