biotapy
mia-style microbiome toolkit for Python on AnnData/TreeData
Getting started
Please refer to the documentation, in particular, the API documentation.
Installation
You need to have Python 3.12 or newer installed on your system. If you don't have Python installed, we recommend installing uv.
We recommend managing dependencies in project-specific virtual environments to avoid dependency conflicts. This is most convenient using package managers such as uv. Choose from the options below to install biotapy:
-
Install the latest development version:
pip install git+https://github.com/pedrocr83/biotapy.git # (or `uv add`)
Release notes
See the changelog.
Contact
For questions and help requests, you can reach out in the scverse discourse. If you found a bug, please use the issue tracker.
Citation
t.b.a
1 maintainer
Metadata
1 maintainer
Release files for biotapy 0.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| biotapy-0.0.1.tar.gz | 80.9 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| biotapy-0.0.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 86.0 kB
Release files / biotapy-0.0.1.tar.gz
| Download URL | biotapy-0.0.1.tar.gz |
|---|---|
| Size | 80.9 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
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Transparency logRelease files / biotapy-0.0.1-py3-none-any.whl
| Download URL | biotapy-0.0.1-py3-none-any.whl |
|---|---|
| Size | 5.0 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Sep 26, 2026.
Transparency log
