Adaptive thresholding toolkit for bioimages
Project description
Biothresh
Adaptive thresholding toolkit for bioimages
Installation
pip install biothresh
Quick Start
from biothresh import BioThreshold
from skimage import data
image = data.camera()
bt = BioThreshold(method='sauvola', window_size=35)
mask = bt.apply(image)
Features
- Local thresholding methods: Niblack, Sauvola, Phansalkar, Feng, Local Otsu, Local Entropy.
- Preprocessing: CLAHE, Background subtraction, Homomorphic filter.
- Postprocessing: Object cleaning and splitting.
- Integration with Cellpose.
License
This project is licensed under the MIT License.
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