biotite

A comprehensive library for computational molecular biology

Project description

The Biotite package bundles popular tools in computational biology into an unifying framework. It offers file I/O operations, analyses and manipulations for biological sequence and structure data. Furthermore, the package provides interfaces for popular biological databases and external software.

The internal structure and sequence representations are based on NumPy ndarrays, taking the advantage of C-accelerated operations. Time consuming operations that could not be vectorised are mostly implemented in Cython in order to achieve C-accelerations in those places, too.

Additionally the package aims for simple usability and extensibility: The objects representing structures and sequences can be indexed and scliced like an ndarray. Even the actual internal ndarrays are easily accessible allowing advanced users to implement their own algorithms upon the existing types.

Project details

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This version

0.21.0

Apr 29, 2020

0.20.1

Feb 28, 2020

0.20.0

Feb 27, 2020

0.19.2

Dec 26, 2019

0.19.1

Dec 24, 2019

0.18.0

Nov 21, 2019

0.17.0

Sep 20, 2019

0.16.0

Aug 16, 2019

0.15.1

Jul 22, 2019

0.15.0

Jul 16, 2019

0.14.0

May 29, 2019

0.13.1

Apr 1, 2019

0.13.0

Mar 19, 2019

0.12.0

Feb 14, 2019

0.11.1

Jan 17, 2019

0.11.0

Jan 14, 2019

0.10.1

Dec 3, 2018

0.10.0

Nov 28, 2018

0.9.0

Oct 31, 2018

0.8.1

Oct 10, 2018

0.8.0

Sep 24, 2018

0.7.0

Jul 12, 2018

0.6.0

May 31, 2018

0.5.3

Mar 8, 2018

0.5.2

Mar 4, 2018

0.5.1

Feb 26, 2018

0.5.0

Feb 8, 2018

0.4.1

Dec 13, 2017

0.4.0

Dec 2, 2017

0.3.3

Nov 27, 2017

0.3.2

Nov 23, 2017

0.3.1

Nov 14, 2017

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