BioX
BioX is a modern, production-grade Python package scaffold for reproducible bioinformatics tooling.
Features
- src/ layout with Hatch builds
- Typed code (mypy), linted and formatted with Ruff
- Pytest + Coverage configuration
- Pre-commit hooks
- GitHub Actions CI for tests, lint, type-checking
- Publishing to PyPI via GitHub Actions (API token) or Twine
Installation
pip install bioxai
Usage
from biox import hello
print(hello())
Development
- Python >= 3.9
- Create venv, then:
pip install -U pip
pip install -e .[dev]
pre-commit install
pytest
Releasing
- Update
CHANGELOG.mdand bump__version__insrc/biox/__init__.py. - Create a git tag like
v0.1.0and push. - GitHub Actions will build and publish to PyPI if
PYPI_API_TOKENis configured in repo secrets, or publish locally with Twine.
License
MIT
1 maintainer
Metadata
1 maintainer
Release files for bioxai 0.0.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| bioxai-0.0.2.tar.gz | 3.2 kB | Without provenance | Details for bioxai-0.0.2.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| bioxai-0.0.2-py3-none-any.whl | Python 3 | none | any | Details for bioxai-0.0.2-py3-none-any.whl |
Total release size: 6.9 kB
Release files / bioxai-0.0.2.tar.gz
| Download URL | bioxai-0.0.2.tar.gz |
|---|---|
| Size | 3.2 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.9
|
Release files / bioxai-0.0.2-py3-none-any.whl
| Download URL | bioxai-0.0.2-py3-none-any.whl |
|---|---|
| Size | 3.6 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.9
|
Security for bioxai 0.0.2
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