BioX
BioX is a modern, production-grade Python package scaffold for reproducible bioinformatics tooling.
Features
- src/ layout with Hatch builds
- Typed code (mypy), linted and formatted with Ruff
- Pytest + Coverage configuration
- Pre-commit hooks
- GitHub Actions CI for tests, lint, type-checking
- Publishing to PyPI via GitHub Actions (API token) or Twine
Installation
pip install bioxai
Usage
from biox import hello
print(hello())
Development
- Python >= 3.9
- Create venv, then:
pip install -U pip
pip install -e .[dev]
pre-commit install
pytest
Releasing
- Update
CHANGELOG.mdand bump__version__insrc/biox/__init__.py. - Create a git tag like
v0.1.0and push. - GitHub Actions will build and publish to PyPI if
PYPI_API_TOKENis configured in repo secrets, or publish locally with Twine.
License
MIT
1 maintainer
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
bioxai-0.0.2.tar.gz
(3.2 kB
view details)
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file bioxai-0.0.2.tar.gz.
File metadata
- Download URL: bioxai-0.0.2.tar.gz
- Upload date:
- Size: 3.2 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via:
twine/6.1.0 CPython/3.12.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
2d3715f7f44e3a1c1b2b1fdde90d37e9c309364083fa02684ee4b44cfa3ce4b8
|
|
| MD5 |
060d50eb1d19c8b971db019f3c14c35c
|
|
| BLAKE2b-256 |
4bf3f42969eac1e4f60fc77cbdd2e79ca2a06221666193dba3884e17d675bb24
|
File details
Details for the file bioxai-0.0.2-py3-none-any.whl.
File metadata
- Download URL: bioxai-0.0.2-py3-none-any.whl
- Upload date:
- Size: 3.6 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via:
twine/6.1.0 CPython/3.12.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
95af6fcb1cfaa656c5d81828a926e285801bfc94ca590baf963d83f582a253d3
|
|
| MD5 |
541ec475904165a8bf231380a15fc182
|
|
| BLAKE2b-256 |
5e148b844aaacbaed9500dc7b5087e969e9e68ff817b60c14343f0377149b83b
|
