bioxai 0.0.2

BioX: A foundation for reproducible bioinformatics tooling

BioX

BioX is a modern, production-grade Python package scaffold for reproducible bioinformatics tooling.

Features

• src/ layout with Hatch builds
• Typed code (mypy), linted and formatted with Ruff
• Pytest + Coverage configuration
• Pre-commit hooks
• GitHub Actions CI for tests, lint, type-checking
• Publishing to PyPI via GitHub Actions (API token) or Twine

Installation

pip install bioxai

Usage

from biox import hello
print(hello())

Development

• Python >= 3.9
• Create venv, then:

pip install -U pip
pip install -e .[dev]
pre-commit install
pytest

Releasing

1. Update CHANGELOG.md and bump __version__ in src/biox/__init__.py.
2. Create a git tag like v0.1.0 and push.
3. GitHub Actions will build and publish to PyPI if PYPI_API_TOKEN is configured in repo secrets, or publish locally with Twine.

License

MIT