bixverse-gpu
GPU twins of the bixverse single
cell methods, on wgpu, in Rust. Import it as bixverse_gpu.
Install
uv pip install "bixverse[gpu]"
This pulls bixverse and manifolds-rs (the GPU UMAP, densMAP, t-SNE and
PHATE run there). For those twins you'll want bixverse[gpu,embed]. There is no
GPU den-SNE or ForceAtlas2; use the bixverse.embed ones.
Layout
Each module mirrors its bixverse namesake: pp, graph, embed,
integrate, de, doublets, metacells, nmf, pathways and trees. The
functions take the same SingleCells objects, write the same cache slots (bar
Harmony and fastMNN, which write harmony_gpu and mnn_gpu) and obs columns
and return the same result types, so a pipeline swaps one import
for the other. GPU-specific knobs live in bixverse_gpu.params; everything
else takes the bixverse.params bundles.
import bixverse as bv
import bixverse_gpu as bvg
bv.pp.find_hvg(sc, hvg_no=2000)
bvg.pp.calculate_pca(sc, 30)
bvg.graph.find_neighbours(sc)
bvg.graph.find_clusters(sc, res=1.0, name="leiden_clusters")
bvg.gpu_available() probes for an adapter. Without one the twins raise
bixverse.BixverseError. A few results get their own name in the cache
(harmony_gpu, mnn_gpu).
1 maintainer
Metadata
1 maintainer
Release files for bixverse-gpu 0.3.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distributions (wheels)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| bixverse_gpu-0.3.0-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.whl | CPython 3.11 | abi3 | Linux glibc 2.17+ x86-64 | Details for bixverse_gpu-0.3.0-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.whl |
| bixverse_gpu-0.3.0-cp311-abi3-macosx_11_0_arm64.whl | CPython 3.11 | abi3 | macOS 11.0+ ARM64 | Details for bixverse_gpu-0.3.0-cp311-abi3-macosx_11_0_arm64.whl |
| bixverse_gpu-0.3.0-cp311-abi3-macosx_10_12_x86_64.whl | CPython 3.11 | abi3 | macOS 10.12+ x86-64 | Details for bixverse_gpu-0.3.0-cp311-abi3-macosx_10_12_x86_64.whl |
Total release size: 60.4 MB
Release files / bixverse_gpu-0.3.0-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.whl
| Download URL | bixverse_gpu-0.3.0-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.whl |
|---|---|
| Size | 21.3 MB |
| Tags | CPython 3.11 Linux glibc 2.17+ x86-64 abi3 |
|
SHA-256 checksum How to use checksums |
1dfc399f56d22030de60e5e1d4210d2a38e7bdc585d47243c203dadd529506f9
|
|
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13db6545e40398f1946471500afbaefc4a86621e7205c8df7d2e050ad25148d3
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| Upload date | |
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Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.16
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Transparency logRelease files / bixverse_gpu-0.3.0-cp311-abi3-macosx_11_0_arm64.whl
| Download URL | bixverse_gpu-0.3.0-cp311-abi3-macosx_11_0_arm64.whl |
|---|---|
| Size | 18.9 MB |
| Tags | CPython 3.11 abi3 macOS 11.0+ ARM64 |
|
SHA-256 checksum How to use checksums |
74ecfd53e5344d01a19844d76c8ff3302ea3350bab1ede634770e21a978ce6bf
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2d60b4e818d0b9de77a1f23b925bfd3703cafbe1ff938502e9c7bd2b4583d161
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.16
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Transparency logRelease files / bixverse_gpu-0.3.0-cp311-abi3-macosx_10_12_x86_64.whl
| Download URL | bixverse_gpu-0.3.0-cp311-abi3-macosx_10_12_x86_64.whl |
|---|---|
| Size | 20.1 MB |
| Tags | CPython 3.11 abi3 macOS 10.12+ x86-64 |
|
SHA-256 checksum How to use checksums |
444251aa9db684284c7b9c8c89f5ac3f7e152140be71b23dfd89b878a2369bb6
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BLAKE2b-256 checksum How to use checksums |
2eca7f4b5b5d0abdb7c2ac2e42c82677d51ee3fbe7ebe4787bdd7b768d1e9c5e
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.16
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