bja-utils 0.1.0

Convenience functions for mass spectrometry proteomics & lipidomics analysis, parsing, statisticss, biological interpretation, and plotting.

bja_utils

bja_utils is a Python package providing convenience functions for mass spectrometry proteomics and lipidomics analysis, data parsing, statistics, biological interpretation, and plotting. It is designed to streamline common workflows and reduce repetitive coding for omics researchers.

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Features

• Data processing and transformation
• Statistical analysis functions
• Visualization and plotting utilities
• Parsing tools for common data formats
• Biological interpretation helpers

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Package Structure

The package is organized into the following modules:

processing

Functions for data preprocessing, multi-processing of computationally intensive tasks, normalization, imputation, and cleaning. Includes tools for handling missing values, scaling, and aggregating omics data.

analysis

Statistical functions and models for downstream analysis. Supports descriptive statistics, hypothesis testing, regression models, and more.

plotting

Helper functions for common plotting tasks matplotlib and plotly. Simplifies custom styling, multi-panel figures, and specialized omics visualizations.

parsing

Functions for reading, parsing, and converting glycoproteomics and lipidomics identifiers.

utils

General helper functions for file handling, logging, and other repetitive tasks that don’t fit into other modules.

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Installation

You can install the latest release via PyPI:

pip install bja_utils