bobaT 0.1.0

A suite for network inference from single-cell RNAseq and ATACseq data

BoBa-T is a suite of network inference tools to derive and simulate gene regulatory networks from transcriptomics data; it is our single-cell update to BooleaBayes, which was published in PLOS Computational Biology, Wooten, Groves et al. (2019).

Installation

To install boba-T, please use:

pip install bobaT

Dependencies

The graph-tool python package will need to be installed. This can be installed with Conda, homebrew, etc as seen here. All other dependencies will be installed with this package.

BooleaBayes Usage:

• net = make or modify network structure

• load = loading data

• proc = processing

• rw = random walk

• plot = plotting

• tl = tools

• utils = utilities